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| author | Suren A. Chilingaryan <csa@suren.me> | 2018-12-13 00:05:49 +0100 |
|---|---|---|
| committer | Suren A. Chilingaryan <csa@suren.me> | 2018-12-13 00:05:49 +0100 |
| commit | 9c3d5c48694db1018d50aa85acad434f47e5ed0b (patch) | |
| tree | bee24b887c12d1abaa4d942525a6c1d304dd200d /external/install.sh | |
| download | biomedisa-9c3d5c48694db1018d50aa85acad434f47e5ed0b.tar.gz biomedisa-9c3d5c48694db1018d50aa85acad434f47e5ed0b.tar.bz2 biomedisa-9c3d5c48694db1018d50aa85acad434f47e5ed0b.tar.xz biomedisa-9c3d5c48694db1018d50aa85acad434f47e5ed0b.zip | |
Initial import
Diffstat (limited to 'external/install.sh')
| -rw-r--r-- | external/install.sh | 22 |
1 files changed, 22 insertions, 0 deletions
diff --git a/external/install.sh b/external/install.sh new file mode 100644 index 0000000..3ad20f6 --- /dev/null +++ b/external/install.sh @@ -0,0 +1,22 @@ +#! /bin/bash + +yum install -y libtiff-devel +yum install -y MySQL-python python-devel python2-pip python2-setuptools python2-virtualenv numpy scipy h5py python2-pyyaml python2-pydot python2-matplotlib mysql-connector-python openblas +yum install -y openmpi openmpi-devel + +# upgrade pip +pip --no-cache-dir install --upgrade pip + +# extra pre-requisites +#pip --no-cache-dir install \ +# scipy decorator + +# conflicting packages +rpm -e scipy pyparsing python2-pydot python-matplotlib python2-matplotlib + +# install dependencies from python packages +export CC=/usr/lib64/openmpi/bin/mpicc + +pip --no-cache-dir install \ + setuptools==39.1.0 numpy==1.14.5 tifffile==0.14.0 SimpleParse==2.1.1 redis==2.10.6 rq==0.12 \ + weave scikit-image opencv-python h5py pydicom Pillow django mpi4py pycuda |