diff options
Diffstat (limited to 'Wrappers')
| -rw-r--r-- | Wrappers/Python/ccpi/optimisation/algorithms/PDHG.py | 60 | ||||
| -rw-r--r-- | Wrappers/Python/ccpi/optimisation/functions/L2NormSquared.py | 5 | ||||
| -rwxr-xr-x | Wrappers/Python/ccpi/optimisation/functions/MixedL21Norm.py | 25 | ||||
| -rwxr-xr-x | Wrappers/Python/wip/pdhg_TV_denoising.py | 146 | ||||
| -rw-r--r-- | Wrappers/Python/wip/pdhg_TV_denoising3D.py | 360 | ||||
| -rw-r--r-- | Wrappers/Python/wip/pdhg_TV_tomography2D.py | 47 |
6 files changed, 497 insertions, 146 deletions
diff --git a/Wrappers/Python/ccpi/optimisation/algorithms/PDHG.py b/Wrappers/Python/ccpi/optimisation/algorithms/PDHG.py index 439149c..5e92767 100644 --- a/Wrappers/Python/ccpi/optimisation/algorithms/PDHG.py +++ b/Wrappers/Python/ccpi/optimisation/algorithms/PDHG.py @@ -126,10 +126,6 @@ def PDHG_old(f, g, operator, tau = None, sigma = None, opt = None, **kwargs): show_iter = opt['show_iter'] if 'show_iter' in opt.keys() else False stop_crit = opt['stop_crit'] if 'stop_crit' in opt.keys() else False - if memopt: - print ("memopt") - else: - print("no memopt") x_old = operator.domain_geometry().allocate() y_old = operator.range_geometry().allocate() @@ -183,65 +179,13 @@ def PDHG_old(f, g, operator, tau = None, sigma = None, opt = None, **kwargs): g.proximal(x_tmp, tau, out = x) - xbar = x - x_old + x.subtract(x_old, out=xbar) xbar *= theta xbar += x - - + x_old.fill(x) y_old.fill(y) - -# pass -# -## # Gradient descent, Dual problem solution -## y_tmp = y_old + sigma * operator.direct(xbar) -# y_tmp = operator.direct(xbar) -# y_tmp *= sigma -# y_tmp +=y_old -# -# y = f.proximal_conjugate(y_tmp, sigma) -## f.proximal_conjugate(y_tmp, sigma, out = y) -# -# # Gradient ascent, Primal problem solution -## x_tmp = x_old - tau * operator.adjoint(y) -# -# x_tmp = operator.adjoint(y) -# x_tmp *=-tau -# x_tmp +=x_old -# -# x = g.proximal(x_tmp, tau) -## g.proximal(x_tmp, tau, out = x) -# -# #Update -## xbar = x + theta * (x - x_old) -# xbar = x - x_old -# xbar *= theta -# xbar += x -# -# x_old = x -# y_old = y -# -## operator.direct(xbar, out = y_tmp) -## y_tmp *= sigma -## y_tmp +=y_old -# if isinstance(f, FunctionOperatorComposition): -# p1 = f(x) + g(x) -# else: -# p1 = f(operator.direct(x)) + g(x) -# d1 = -(f.convex_conjugate(y) + g(-1*operator.adjoint(y))) -# pd1 = p1 - d1 - -# primal.append(p1) -# dual.append(d1) -# pdgap.append(pd1) - -# if i%100==0: -# print(p1, d1, pd1) -# if isinstance(f, FunctionOperatorComposition): -# p1 = f(x) + g(x) -# else: - t_end = time.time() diff --git a/Wrappers/Python/ccpi/optimisation/functions/L2NormSquared.py b/Wrappers/Python/ccpi/optimisation/functions/L2NormSquared.py index 7397cfb..2d0a00a 100644 --- a/Wrappers/Python/ccpi/optimisation/functions/L2NormSquared.py +++ b/Wrappers/Python/ccpi/optimisation/functions/L2NormSquared.py @@ -116,9 +116,10 @@ class L2NormSquared(Function): return x/(1 + tau/2) else: if self.b is not None: - out.fill( (x - tau*self.b)/(1 + tau/2) ) + x.subtract(tau*self.b, out=out) + out.divide(1+tau/2, out=out) else: - out.fill( x/(1 + tau/2) ) + x.divide(1 + tau/2, out=out) def __rmul__(self, scalar): diff --git a/Wrappers/Python/ccpi/optimisation/functions/MixedL21Norm.py b/Wrappers/Python/ccpi/optimisation/functions/MixedL21Norm.py index f524c5f..3541bc2 100755 --- a/Wrappers/Python/ccpi/optimisation/functions/MixedL21Norm.py +++ b/Wrappers/Python/ccpi/optimisation/functions/MixedL21Norm.py @@ -94,19 +94,22 @@ class MixedL21Norm(Function): else: if out is None: -# tmp = [ el*el for el in x.containers] -# res = sum(tmp).sqrt().maximum(1.0) -# frac = [el/res for el in x.containers] -# res = BlockDataContainer(*frac) -# return res - - return x.divide(x.pnorm().maximum(1.0)) + tmp = [ el*el for el in x.containers] + res = sum(tmp).sqrt().maximum(1.0) + frac = [el/res for el in x.containers] + return BlockDataContainer(*frac) + + #TODO this is slow, why??? +# return x.divide(x.pnorm().maximum(1.0)) else: -# res1 = functools.reduce(lambda a,b: a + b*b, x.containers, x.get_item(0) * 0 ) -# res = res1.sqrt().maximum(1.0) -# x.divide(res, out=out) - x.divide(x.pnorm().maximum(1.0), out=out) + res1 = functools.reduce(lambda a,b: a + b*b, x.containers, x.get_item(0) * 0 ) + res = res1.sqrt().maximum(1.0) + x.divide(res, out=out) + +# x.divide(sum([el*el for el in x.containers]).sqrt().maximum(1.0), out=out) + #TODO this is slow, why ??? +# x.divide(x.norm().maximum(1.0), out=out) def __rmul__(self, scalar): diff --git a/Wrappers/Python/wip/pdhg_TV_denoising.py b/Wrappers/Python/wip/pdhg_TV_denoising.py index d885bca..e142d94 100755 --- a/Wrappers/Python/wip/pdhg_TV_denoising.py +++ b/Wrappers/Python/wip/pdhg_TV_denoising.py @@ -27,7 +27,7 @@ def dt(steps): # Create phantom for TV denoising -N = 200 +N = 500 data = np.zeros((N,N)) data[round(N/4):round(3*N/4),round(N/4):round(3*N/4)] = 0.5 @@ -40,8 +40,8 @@ ag = ig n1 = random_noise(data, mode = 'gaussian', mean=0, var = 0.05, seed=10) noisy_data = ImageData(n1) -#plt.imshow(noisy_data.as_array()) -#plt.show() +plt.imshow(noisy_data.as_array()) +plt.show() #%% @@ -82,7 +82,6 @@ else: # Compute operator Norm normK = operator.norm() -print ("normK", normK) # Primal & dual stepsizes sigma = 1 @@ -91,54 +90,113 @@ tau = 1/(sigma*normK**2) opt = {'niter':2000} opt1 = {'niter':2000, 'memopt': True} -#t1 = timer() -#res, time, primal, dual, pdgap = PDHG_old(f, g, operator, tau = tau, sigma = sigma, opt = opt) -#print(timer()-t1) -# -#print("with memopt \n") -# -#t2 = timer() -#res1, time1, primal1, dual1, pdgap1 = PDHG_old(f, g, operator, tau = tau, sigma = sigma, opt = opt1) -#print(timer()-t2) - -pdhg = PDHG(f=f,g=g,operator=operator, tau=tau, sigma=sigma) -pdhg.max_iteration = 2000 -pdhg.update_objective_interval = 100 - +t1 = timer() +res, time, primal, dual, pdgap = PDHG_old(f, g, operator, tau = tau, sigma = sigma, opt = opt) +t2 = timer() -pdhgo = PDHG(f=f,g=g,operator=operator, tau=tau, sigma=sigma, memopt=True) -pdhgo.max_iteration = 2000 -pdhgo.update_objective_interval = 100 -steps = [timer()] -pdhgo.run(2000) -steps.append(timer()) -t1 = dt(steps) - -pdhg.run(2000) -steps.append(timer()) -t2 = dt(steps) +t3 = timer() +res1, time1, primal1, dual1, pdgap1 = PDHG_old(f, g, operator, tau = tau, sigma = sigma, opt = opt1) +t4 = timer() +# +print ("No memopt in {}s, memopt in {}s ".format(t2-t1, t4 -t3)) -print ("Time difference {}s {}s {}s Speedup {:.2f}".format(t1,t2,t2-t1, t2/t1)) -res = pdhg.get_output() -res1 = pdhgo.get_output() +# +#%% +#pdhg = PDHG(f=f,g=g,operator=operator, tau=tau, sigma=sigma) +#pdhg.max_iteration = 2000 +#pdhg.update_objective_interval = 100 +## +#pdhgo = PDHG(f=f,g=g,operator=operator, tau=tau, sigma=sigma, memopt=True) +#pdhgo.max_iteration = 2000 +#pdhgo.update_objective_interval = 100 +## +#steps = [timer()] +#pdhgo.run(2000) +#steps.append(timer()) +#t1 = dt(steps) +## +#pdhg.run(2000) +#steps.append(timer()) +#t2 = dt(steps) +# +#print ("Time difference {}s {}s {}s Speedup {:.2f}".format(t1,t2,t2-t1, t2/t1)) +#res = pdhg.get_output() +#res1 = pdhgo.get_output() -diff = (res-res1) -print ("diff norm {} max {}".format(diff.norm(), diff.abs().as_array().max())) -print ("Sum ( abs(diff) ) {}".format(diff.abs().sum())) +#%% +#plt.figure(figsize=(15,15)) +#plt.subplot(3,1,1) +#plt.imshow(res.as_array()) +#plt.title('no memopt') +#plt.colorbar() +#plt.subplot(3,1,2) +#plt.imshow(res1.as_array()) +#plt.title('memopt') +#plt.colorbar() +#plt.subplot(3,1,3) +#plt.imshow((res1 - res).abs().as_array()) +#plt.title('diff') +#plt.colorbar() +#plt.show() -plt.figure(figsize=(5,5)) -plt.subplot(1,3,1) -plt.imshow(res.as_array()) -plt.colorbar() +#plt.figure(figsize=(15,15)) +#plt.subplot(3,1,1) +#plt.imshow(pdhg.get_output().as_array()) +#plt.title('no memopt class') +#plt.colorbar() +#plt.subplot(3,1,2) +#plt.imshow(res.as_array()) +#plt.title('no memopt') +#plt.colorbar() +#plt.subplot(3,1,3) +#plt.imshow((pdhg.get_output() - res).abs().as_array()) +#plt.title('diff') +#plt.colorbar() #plt.show() - -#plt.figure(figsize=(5,5)) -plt.subplot(1,3,2) -plt.imshow(res1.as_array()) -plt.colorbar() +# +# +# +#plt.figure(figsize=(15,15)) +#plt.subplot(3,1,1) +#plt.imshow(pdhgo.get_output().as_array()) +#plt.title('memopt class') +#plt.colorbar() +#plt.subplot(3,1,2) +#plt.imshow(res1.as_array()) +#plt.title('no memopt') +#plt.colorbar() +#plt.subplot(3,1,3) +#plt.imshow((pdhgo.get_output() - res1).abs().as_array()) +#plt.title('diff') +#plt.colorbar() +#plt.show() + + + + +# print ("Time difference {}s {}s {}s Speedup {:.2f}".format(t1,t2,t2-t1, t2/t1)) +# res = pdhg.get_output() +# res1 = pdhgo.get_output() +# +# diff = (res-res1) +# print ("diff norm {} max {}".format(diff.norm(), diff.abs().as_array().max())) +# print ("Sum ( abs(diff) ) {}".format(diff.abs().sum())) +# +# +# plt.figure(figsize=(5,5)) +# plt.subplot(1,3,1) +# plt.imshow(res.as_array()) +# plt.colorbar() +# #plt.show() +# +# #plt.figure(figsize=(5,5)) +# plt.subplot(1,3,2) +# plt.imshow(res1.as_array()) +# plt.colorbar() + #plt.show() diff --git a/Wrappers/Python/wip/pdhg_TV_denoising3D.py b/Wrappers/Python/wip/pdhg_TV_denoising3D.py new file mode 100644 index 0000000..06ecfa2 --- /dev/null +++ b/Wrappers/Python/wip/pdhg_TV_denoising3D.py @@ -0,0 +1,360 @@ +#!/usr/bin/env python3 +# -*- coding: utf-8 -*- +""" +Created on Fri Feb 22 14:53:03 2019 + +@author: evangelos +""" + +from ccpi.framework import ImageData, ImageGeometry, BlockDataContainer + +import numpy as np +import matplotlib.pyplot as plt + +from ccpi.optimisation.algorithms import PDHG, PDHG_old + +from ccpi.optimisation.operators import BlockOperator, Identity, Gradient +from ccpi.optimisation.functions import ZeroFunction, L2NormSquared, \ + MixedL21Norm, FunctionOperatorComposition, BlockFunction + +from skimage.util import random_noise + +from timeit import default_timer as timer +def dt(steps): + return steps[-1] - steps[-2] + +#%% + +# Create phantom for TV denoising + +import timeit +import os +from tomophantom import TomoP3D +import tomophantom + +print ("Building 3D phantom using TomoPhantom software") +tic=timeit.default_timer() +model = 13 # select a model number from the library +N_size = 64 # Define phantom dimensions using a scalar value (cubic phantom) +path = os.path.dirname(tomophantom.__file__) +path_library3D = os.path.join(path, "Phantom3DLibrary.dat") +#This will generate a N_size x N_size x N_size phantom (3D) +phantom_tm = TomoP3D.Model(model, N_size, path_library3D) +#toc=timeit.default_timer() +#Run_time = toc - tic +#print("Phantom has been built in {} seconds".format(Run_time)) +# +#sliceSel = int(0.5*N_size) +##plt.gray() +#plt.figure() +#plt.subplot(131) +#plt.imshow(phantom_tm[sliceSel,:,:],vmin=0, vmax=1) +#plt.title('3D Phantom, axial view') +# +#plt.subplot(132) +#plt.imshow(phantom_tm[:,sliceSel,:],vmin=0, vmax=1) +#plt.title('3D Phantom, coronal view') +# +#plt.subplot(133) +#plt.imshow(phantom_tm[:,:,sliceSel],vmin=0, vmax=1) +#plt.title('3D Phantom, sagittal view') +#plt.show() + +#%% + +N = N_size +ig = ImageGeometry(voxel_num_x=N, voxel_num_y=N, voxel_num_z=N) + +n1 = random_noise(phantom_tm, mode = 'gaussian', mean=0, var = 0.001, seed=10) +noisy_data = ImageData(n1) +#plt.imshow(noisy_data.as_array()[:,:,32]) + +#%% + +# Regularisation Parameter +alpha = 0.02 + +#method = input("Enter structure of PDHG (0=Composite or 1=NotComposite): ") +method = '0' + +if method == '0': + + # Create operators + op1 = Gradient(ig) + op2 = Identity(ig) + + # Form Composite Operator + operator = BlockOperator(op1, op2, shape=(2,1) ) + + #### Create functions + + f1 = alpha * MixedL21Norm() + f2 = 0.5 * L2NormSquared(b = noisy_data) + f = BlockFunction(f1, f2) + + g = ZeroFunction() + +else: + + ########################################################################### + # No Composite # + ########################################################################### + operator = Gradient(ig) + f = alpha * FunctionOperatorComposition(operator, MixedL21Norm()) + g = L2NormSquared(b = noisy_data) + + ########################################################################### +#%% + +# Compute operator Norm +normK = operator.norm() + +# Primal & dual stepsizes +sigma = 1 +tau = 1/(sigma*normK**2) + +opt = {'niter':2000} +opt1 = {'niter':2000, 'memopt': True} + +#t1 = timer() +#res, time, primal, dual, pdgap = PDHG_old(f, g, operator, tau = tau, sigma = sigma, opt = opt) +#t2 = timer() + + +t3 = timer() +res1, time1, primal1, dual1, pdgap1 = PDHG_old(f, g, operator, tau = tau, sigma = sigma, opt = opt1) +t4 = timer() + +#import cProfile +#cProfile.run('res1, time1, primal1, dual1, pdgap1 = PDHG_old(f, g, operator, tau = tau, sigma = sigma, opt = opt1) ') +### +print ("No memopt in {}s, memopt in {}s ".format(t2-t1, t4 -t3)) +# +## +##%% +# +#plt.figure(figsize=(10,10)) +#plt.subplot(311) +#plt.imshow(res1.as_array()[sliceSel,:,:]) +#plt.colorbar() +#plt.title('3D Phantom, axial view') +# +#plt.subplot(312) +#plt.imshow(res1.as_array()[:,sliceSel,:]) +#plt.colorbar() +#plt.title('3D Phantom, coronal view') +# +#plt.subplot(313) +#plt.imshow(res1.as_array()[:,:,sliceSel]) +#plt.colorbar() +#plt.title('3D Phantom, sagittal view') +#plt.show() +# +#plt.figure(figsize=(10,10)) +#plt.subplot(311) +#plt.imshow(res.as_array()[sliceSel,:,:]) +#plt.colorbar() +#plt.title('3D Phantom, axial view') +# +#plt.subplot(312) +#plt.imshow(res.as_array()[:,sliceSel,:]) +#plt.colorbar() +#plt.title('3D Phantom, coronal view') +# +#plt.subplot(313) +#plt.imshow(res.as_array()[:,:,sliceSel]) +#plt.colorbar() +#plt.title('3D Phantom, sagittal view') +#plt.show() +# +#diff = (res1 - res).abs() +# +#plt.figure(figsize=(10,10)) +#plt.subplot(311) +#plt.imshow(diff.as_array()[sliceSel,:,:]) +#plt.colorbar() +#plt.title('3D Phantom, axial view') +# +#plt.subplot(312) +#plt.imshow(diff.as_array()[:,sliceSel,:]) +#plt.colorbar() +#plt.title('3D Phantom, coronal view') +# +#plt.subplot(313) +#plt.imshow(diff.as_array()[:,:,sliceSel]) +#plt.colorbar() +#plt.title('3D Phantom, sagittal view') +#plt.show() +# +# +# +# +##%% +#pdhg = PDHG(f=f,g=g,operator=operator, tau=tau, sigma=sigma) +#pdhg.max_iteration = 2000 +#pdhg.update_objective_interval = 100 +#### +#pdhgo = PDHG(f=f,g=g,operator=operator, tau=tau, sigma=sigma, memopt=True) +#pdhgo.max_iteration = 2000 +#pdhgo.update_objective_interval = 100 +#### +#steps = [timer()] +#pdhgo.run(2000) +#steps.append(timer()) +#t1 = dt(steps) +## +#pdhg.run(2000) +#steps.append(timer()) +#t2 = dt(steps) +# +#print ("Time difference {}s {}s {}s Speedup {:.2f}".format(t1,t2,t2-t1, t2/t1)) +#res = pdhg.get_output() +#res1 = pdhgo.get_output() + +#%% +#plt.figure(figsize=(15,15)) +#plt.subplot(3,1,1) +#plt.imshow(res.as_array()) +#plt.title('no memopt') +#plt.colorbar() +#plt.subplot(3,1,2) +#plt.imshow(res1.as_array()) +#plt.title('memopt') +#plt.colorbar() +#plt.subplot(3,1,3) +#plt.imshow((res1 - res).abs().as_array()) +#plt.title('diff') +#plt.colorbar() +#plt.show() + + +#plt.figure(figsize=(15,15)) +#plt.subplot(3,1,1) +#plt.imshow(pdhg.get_output().as_array()) +#plt.title('no memopt class') +#plt.colorbar() +#plt.subplot(3,1,2) +#plt.imshow(res.as_array()) +#plt.title('no memopt') +#plt.colorbar() +#plt.subplot(3,1,3) +#plt.imshow((pdhg.get_output() - res).abs().as_array()) +#plt.title('diff') +#plt.colorbar() +#plt.show() +# +# +# +#plt.figure(figsize=(15,15)) +#plt.subplot(3,1,1) +#plt.imshow(pdhgo.get_output().as_array()) +#plt.title('memopt class') +#plt.colorbar() +#plt.subplot(3,1,2) +#plt.imshow(res1.as_array()) +#plt.title('no memopt') +#plt.colorbar() +#plt.subplot(3,1,3) +#plt.imshow((pdhgo.get_output() - res1).abs().as_array()) +#plt.title('diff') +#plt.colorbar() +#plt.show() + + + + + +# print ("Time difference {}s {}s {}s Speedup {:.2f}".format(t1,t2,t2-t1, t2/t1)) +# res = pdhg.get_output() +# res1 = pdhgo.get_output() +# +# diff = (res-res1) +# print ("diff norm {} max {}".format(diff.norm(), diff.abs().as_array().max())) +# print ("Sum ( abs(diff) ) {}".format(diff.abs().sum())) +# +# +# plt.figure(figsize=(5,5)) +# plt.subplot(1,3,1) +# plt.imshow(res.as_array()) +# plt.colorbar() +# #plt.show() +# +# #plt.figure(figsize=(5,5)) +# plt.subplot(1,3,2) +# plt.imshow(res1.as_array()) +# plt.colorbar() + +#plt.show() + + + +#======= +## opt = {'niter':2000, 'memopt': True} +# +## res, time, primal, dual, pdgap = PDHG_old(f, g, operator, tau = tau, sigma = sigma, opt = opt) +# +#>>>>>>> origin/pdhg_fix +# +# +## opt = {'niter':2000, 'memopt': False} +## res1, time1, primal1, dual1, pdgap1 = PDHG_old(f, g, operator, tau = tau, sigma = sigma, opt = opt) +# +## plt.figure(figsize=(5,5)) +## plt.subplot(1,3,1) +## plt.imshow(res.as_array()) +## plt.title('memopt') +## plt.colorbar() +## plt.subplot(1,3,2) +## plt.imshow(res1.as_array()) +## plt.title('no memopt') +## plt.colorbar() +## plt.subplot(1,3,3) +## plt.imshow((res1 - res).abs().as_array()) +## plt.title('diff') +## plt.colorbar() +## plt.show() +#pdhg = PDHG(f=f,g=g,operator=operator, tau=tau, sigma=sigma) +#pdhg.max_iteration = 2000 +#pdhg.update_objective_interval = 100 +# +# +#pdhgo = PDHG(f=f,g=g,operator=operator, tau=tau, sigma=sigma, memopt=True) +#pdhgo.max_iteration = 2000 +#pdhgo.update_objective_interval = 100 +# +#steps = [timer()] +#pdhgo.run(200) +#steps.append(timer()) +#t1 = dt(steps) +# +#pdhg.run(200) +#steps.append(timer()) +#t2 = dt(steps) +# +#print ("Time difference {} {} {}".format(t1,t2,t2-t1)) +#sol = pdhg.get_output().as_array() +##sol = result.as_array() +## +#fig = plt.figure() +#plt.subplot(1,3,1) +#plt.imshow(noisy_data.as_array()) +#plt.colorbar() +#plt.subplot(1,3,2) +#plt.imshow(sol) +#plt.colorbar() +#plt.subplot(1,3,3) +#plt.imshow(pdhgo.get_output().as_array()) +#plt.colorbar() +# +#plt.show() +### +## +#### +##plt.plot(np.linspace(0,N,N), data[int(N/2),:], label = 'GTruth') +##plt.plot(np.linspace(0,N,N), sol[int(N/2),:], label = 'Recon') +##plt.legend() +##plt.show() +# +# +##%% +## diff --git a/Wrappers/Python/wip/pdhg_TV_tomography2D.py b/Wrappers/Python/wip/pdhg_TV_tomography2D.py index e0868f7..3fec34e 100644 --- a/Wrappers/Python/wip/pdhg_TV_tomography2D.py +++ b/Wrappers/Python/wip/pdhg_TV_tomography2D.py @@ -56,7 +56,7 @@ detectors = 150 angles = np.linspace(0,np.pi,100) ag = AcquisitionGeometry('parallel','2D',angles, detectors) -Aop = AstraProjectorSimple(ig, ag, 'cpu') +Aop = AstraProjectorSimple(ig, ag, 'gpu') sin = Aop.direct(data) plt.imshow(sin.as_array()) @@ -113,43 +113,28 @@ else: sigma = 1 tau = 1/(sigma*normK**2) -#pdhg = PDHG(f=f,g=g,operator=operator, tau=tau, sigma=sigma) -#pdhg.max_iteration = 5000 -#pdhg.update_objective_interval = 250 -# -#pdhg.run(5000) - -opt = {'niter':300} -opt1 = {'niter':300, 'memopt': True} +# Compute operator Norm +normK = operator.norm() + +# Primal & dual stepsizes +sigma = 1 +tau = 1/(sigma*normK**2) +opt = {'niter':2000} +opt1 = {'niter':2000, 'memopt': True} t1 = timer() res, time, primal, dual, pdgap = PDHG_old(f, g, operator, tau = tau, sigma = sigma, opt = opt) - -print(timer()-t1) -plt.figure(figsize=(5,5)) -plt.imshow(res.as_array()) -plt.colorbar() -plt.show() - -#%% -print("with memopt \n") -# t2 = timer() + + +t3 = timer() res1, time1, primal1, dual1, pdgap1 = PDHG_old(f, g, operator, tau = tau, sigma = sigma, opt = opt1) -#print(timer()-t2) -# -# -plt.figure(figsize=(5,5)) -plt.imshow(res1.as_array()) -plt.colorbar() -plt.show() +t4 = timer() # -#%% -plt.figure(figsize=(5,5)) -plt.imshow(np.abs(res1.as_array()-res.as_array())) -plt.colorbar() -plt.show() +print ("No memopt in {}s, memopt in {}s ".format(t2-t1, t4 -t3)) + + #%% #sol = pdhg.get_output().as_array() #fig = plt.figure() |