/* ----------------------------------------------------------------------- Copyright: 2010-2015, iMinds-Vision Lab, University of Antwerp 2014-2015, CWI, Amsterdam Contact: astra@uantwerpen.be Website: http://sf.net/projects/astra-toolbox This file is part of the ASTRA Toolbox. The ASTRA Toolbox is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. The ASTRA Toolbox is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with the ASTRA Toolbox. If not, see . ----------------------------------------------------------------------- $Id$ */ #ifdef ASTRA_CUDA #include "astra/CudaReconstructionAlgorithm2D.h" #include "astra/AstraObjectManager.h" #include "astra/FanFlatProjectionGeometry2D.h" #include "astra/FanFlatVecProjectionGeometry2D.h" #include "astra/CudaProjector2D.h" #include "astra/Logging.h" #include "../cuda/2d/algo.h" #include using namespace std; namespace astra { //---------------------------------------------------------------------------------------- // Constructor CCudaReconstructionAlgorithm2D::CCudaReconstructionAlgorithm2D() { _clear(); } //---------------------------------------------------------------------------------------- // Destructor CCudaReconstructionAlgorithm2D::~CCudaReconstructionAlgorithm2D() { delete m_pAlgo; m_pAlgo = 0; m_bAlgoInit = false; } void CCudaReconstructionAlgorithm2D::clear() { delete m_pAlgo; _clear(); } void CCudaReconstructionAlgorithm2D::_clear() { m_bIsInitialized = false; m_pAlgo = 0; m_bAlgoInit = false; CReconstructionAlgorithm2D::_clear(); m_iGPUIndex = -1; m_iDetectorSuperSampling = 1; m_iPixelSuperSampling = 1; } //--------------------------------------------------------------------------------------- void CCudaReconstructionAlgorithm2D::initializeFromProjector() { m_iPixelSuperSampling = 1; m_iDetectorSuperSampling = 1; m_iGPUIndex = -1; // Projector CCudaProjector2D* pCudaProjector = dynamic_cast(m_pProjector); if (!pCudaProjector) { if (m_pProjector) { ASTRA_WARN("non-CUDA Projector2D passed"); } } else { m_iDetectorSuperSampling = pCudaProjector->getDetectorSuperSampling(); m_iPixelSuperSampling = pCudaProjector->getVoxelSuperSampling(); m_iGPUIndex = pCudaProjector->getGPUIndex(); } } //--------------------------------------------------------------------------------------- // Initialize - Config bool CCudaReconstructionAlgorithm2D::initialize(const Config& _cfg) { ASTRA_ASSERT(_cfg.self); ConfigStackCheck CC("CudaReconstructionAlgorithm2D", this, _cfg); m_bIsInitialized = CReconstructionAlgorithm2D::initialize(_cfg); if (!m_bIsInitialized) return false; initializeFromProjector(); // Deprecated options m_iDetectorSuperSampling = (int)_cfg.self.getOptionNumerical("DetectorSuperSampling", m_iDetectorSuperSampling); m_iPixelSuperSampling = (int)_cfg.self.getOptionNumerical("PixelSuperSampling", m_iPixelSuperSampling); CC.markOptionParsed("DetectorSuperSampling"); CC.markOptionParsed("PixelSuperSampling"); // GPU number m_iGPUIndex = (int)_cfg.self.getOptionNumerical("GPUindex", -1); m_iGPUIndex = (int)_cfg.self.getOptionNumerical("GPUIndex", m_iGPUIndex); CC.markOptionParsed("GPUIndex"); if (!_cfg.self.hasOption("GPUIndex")) CC.markOptionParsed("GPUindex"); return _check(); } //--------------------------------------------------------------------------------------- // Initialize - C++ bool CCudaReconstructionAlgorithm2D::initialize(CProjector2D* _pProjector, CFloat32ProjectionData2D* _pSinogram, CFloat32VolumeData2D* _pReconstruction) { // if already initialized, clear first if (m_bIsInitialized) { clear(); } m_pProjector = _pProjector; // required classes m_pSinogram = _pSinogram; m_pReconstruction = _pReconstruction; initializeFromProjector(); return _check(); } //---------------------------------------------------------------------------------------- // Check bool CCudaReconstructionAlgorithm2D::_check() { if (!CReconstructionAlgorithm2D::_check()) return false; ASTRA_CONFIG_CHECK(m_iDetectorSuperSampling >= 1, "CudaReconstructionAlgorithm2D", "DetectorSuperSampling must be a positive integer."); ASTRA_CONFIG_CHECK(m_iPixelSuperSampling >= 1, "CudaReconstructionAlgorithm2D", "PixelSuperSampling must be a positive integer."); ASTRA_CONFIG_CHECK(m_iGPUIndex >= -1, "CudaReconstructionAlgorithm2D", "GPUIndex must be a non-negative integer or -1."); // check restrictions // TODO: check restrictions built into cuda code // success m_bIsInitialized = true; return true; } void CCudaReconstructionAlgorithm2D::setGPUIndex(int _iGPUIndex) { m_iGPUIndex = _iGPUIndex; } //--------------------------------------------------------------------------------------- // Information - All map CCudaReconstructionAlgorithm2D::getInformation() { // TODO: Verify and clean up map res; res["ProjectionGeometry"] = getInformation("ProjectionGeometry"); res["ReconstructionGeometry"] = getInformation("ReconstructionGeometry"); res["ProjectionDataId"] = getInformation("ProjectionDataId"); res["ReconstructionDataId"] = getInformation("ReconstructionDataId"); res["ReconstructionMaskId"] = getInformation("ReconstructionMaskId"); res["GPUindex"] = getInformation("GPUindex"); res["DetectorSuperSampling"] = getInformation("DetectorSuperSampling"); res["PixelSuperSampling"] = getInformation("PixelSuperSampling"); res["UseMinConstraint"] = getInformation("UseMinConstraint"); res["MinConstraintValue"] = getInformation("MinConstraintValue"); res["UseMaxConstraint"] = getInformation("UseMaxConstraint"); res["MaxConstraintValue"] = getInformation("MaxConstraintValue"); return mergeMap(CReconstructionAlgorithm2D::getInformation(), res); } //--------------------------------------------------------------------------------------- // Information - Specific boost::any CCudaReconstructionAlgorithm2D::getInformation(std::string _sIdentifier) { // TODO: Verify and clean up if (_sIdentifier == "UseMinConstraint") { return m_bUseMinConstraint ? string("yes") : string("no"); } if (_sIdentifier == "MinConstraintValue") { return m_fMinValue; } if (_sIdentifier == "UseMaxConstraint") { return m_bUseMaxConstraint ? string("yes") : string("no"); } if (_sIdentifier == "MaxConstraintValue") { return m_fMaxValue; } // TODO: store these so we can return them? if (_sIdentifier == "ProjectionGeometry") { return string("not implemented"); } if (_sIdentifier == "ReconstructionGeometry") { return string("not implemented"); } if (_sIdentifier == "GPUindex") { return m_iGPUIndex; } if (_sIdentifier == "DetectorSuperSampling") { return m_iDetectorSuperSampling; } if (_sIdentifier == "PixelSuperSampling") { return m_iPixelSuperSampling; } if (_sIdentifier == "ProjectionDataId") { int iIndex = CData2DManager::getSingleton().getIndex(m_pSinogram); if (iIndex != 0) return iIndex; return std::string("not in manager"); } if (_sIdentifier == "ReconstructionDataId") { int iIndex = CData2DManager::getSingleton().getIndex(m_pReconstruction); if (iIndex != 0) return iIndex; return std::string("not in manager"); } if (_sIdentifier == "ReconstructionMaskId") { if (!m_bUseReconstructionMask) return string("not used"); int iIndex = CData2DManager::getSingleton().getIndex(m_pReconstructionMask); if (iIndex != 0) return iIndex; return std::string("not in manager"); } return CReconstructionAlgorithm2D::getInformation(_sIdentifier); } bool CCudaReconstructionAlgorithm2D::setupGeometry() { ASTRA_ASSERT(m_bIsInitialized); ASTRA_ASSERT(!m_bAlgoInit); bool ok; // TODO: Probably not the best place for this... ok = m_pAlgo->setGPUIndex(m_iGPUIndex); if (!ok) return false; const CVolumeGeometry2D& volgeom = *m_pReconstruction->getGeometry(); const CProjectionGeometry2D& projgeom = *m_pSinogram->getGeometry(); ok = m_pAlgo->setGeometry(&volgeom, &projgeom); if (!ok) return false; ok = m_pAlgo->setSuperSampling(m_iDetectorSuperSampling, m_iPixelSuperSampling); if (!ok) return false; if (m_bUseReconstructionMask) ok &= m_pAlgo->enableVolumeMask(); if (!ok) return false; if (m_bUseSinogramMask) ok &= m_pAlgo->enableSinogramMask(); if (!ok) return false; ok &= m_pAlgo->init(); if (!ok) return false; return true; } //---------------------------------------------------------------------------------------- void CCudaReconstructionAlgorithm2D::initCUDAAlgorithm() { bool ok; ok = setupGeometry(); ASTRA_ASSERT(ok); ok = m_pAlgo->allocateBuffers(); ASTRA_ASSERT(ok); } //---------------------------------------------------------------------------------------- // Iterate void CCudaReconstructionAlgorithm2D::run(int _iNrIterations) { // check initialized ASTRA_ASSERT(m_bIsInitialized); bool ok = true; const CVolumeGeometry2D& volgeom = *m_pReconstruction->getGeometry(); if (!m_bAlgoInit) { initCUDAAlgorithm(); m_bAlgoInit = true; } float fPixelSize = volgeom.getPixelLengthX(); float fSinogramScale = 1.0f/(fPixelSize*fPixelSize); ok = m_pAlgo->copyDataToGPU(m_pSinogram->getDataConst(), m_pSinogram->getGeometry()->getDetectorCount(), fSinogramScale, m_pReconstruction->getDataConst(), volgeom.getGridColCount(), m_bUseReconstructionMask ? m_pReconstructionMask->getDataConst() : 0, volgeom.getGridColCount(), m_bUseSinogramMask ? m_pSinogramMask->getDataConst() : 0, m_pSinogram->getGeometry()->getDetectorCount()); ASTRA_ASSERT(ok); if (m_bUseMinConstraint) { bool ret = m_pAlgo->setMinConstraint(m_fMinValue); if (!ret) { ASTRA_WARN("This algorithm ignores MinConstraint"); } } if (m_bUseMaxConstraint) { bool ret= m_pAlgo->setMaxConstraint(m_fMaxValue); if (!ret) { ASTRA_WARN("This algorithm ignores MaxConstraint"); } } ok &= m_pAlgo->iterate(_iNrIterations); ASTRA_ASSERT(ok); ok &= m_pAlgo->getReconstruction(m_pReconstruction->getData(), volgeom.getGridColCount()); ASTRA_ASSERT(ok); } void CCudaReconstructionAlgorithm2D::signalAbort() { if (m_bIsInitialized && m_pAlgo) { m_pAlgo->signalAbort(); } } bool CCudaReconstructionAlgorithm2D::getResidualNorm(float32& _fNorm) { if (!m_bIsInitialized || !m_pAlgo) return false; _fNorm = m_pAlgo->computeDiffNorm(); return true; } } // namespace astra #endif // ASTRA_CUDA