#----------------------------------------------------------------------- #Copyright 2013 Centrum Wiskunde & Informatica, Amsterdam # #Author: Daniel M. Pelt #Contact: D.M.Pelt@cwi.nl #Website: http://dmpelt.github.io/pyastratoolbox/ # # #This file is part of the Python interface to the #All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox"). # #The Python interface to the ASTRA Toolbox is free software: you can redistribute it and/or modify #it under the terms of the GNU General Public License as published by #the Free Software Foundation, either version 3 of the License, or #(at your option) any later version. # #The Python interface to the ASTRA Toolbox is distributed in the hope that it will be useful, #but WITHOUT ANY WARRANTY; without even the implied warranty of #MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the #GNU General Public License for more details. # #You should have received a copy of the GNU General Public License #along with the Python interface to the ASTRA Toolbox. If not, see . # #----------------------------------------------------------------------- # distutils: language = c++ # distutils: libraries = astra cimport numpy as np import numpy as np import six from libcpp.string cimport string from libcpp.vector cimport vector from cython.operator cimport dereference as deref, preincrement as inc from cpython.version cimport PY_MAJOR_VERSION cimport PyXMLDocument from .PyXMLDocument cimport XMLDocument from .PyXMLDocument cimport XMLNode from .PyIncludes cimport * cdef extern from "astra/PluginAlgorithm.h" namespace "astra": object XMLNode2dict(XMLNode) cdef Config * dictToConfig(string rootname, dc): cdef Config * cfg = new Config() cfg.initialize(rootname) try: readDict(cfg.self, dc) except Exception as e: del cfg six.print_(e.strerror) return NULL return cfg def convert_item(item): if isinstance(item, six.string_types): return item.encode('ascii') if type(item) is not dict: return item out_dict = {} for k in item: out_dict[convert_item(k)] = convert_item(item[k]) return out_dict def wrap_to_bytes(value): if isinstance(value, six.binary_type): return value s = str(value) if PY_MAJOR_VERSION == 3: s = s.encode('ascii') return s def wrap_from_bytes(value): s = value if PY_MAJOR_VERSION == 3: s = s.decode('ascii') return s cdef void readDict(XMLNode root, _dc): cdef XMLNode listbase cdef XMLNode itm cdef int i cdef int j cdef double* data dc = convert_item(_dc) for item in dc: val = dc[item] if isinstance(val, list) or isinstance(val, tuple): val = np.array(val,dtype=np.float64) if isinstance(val, np.ndarray): if val.size == 0: break listbase = root.addChildNode(item) data = np.PyArray_DATA(np.ascontiguousarray(val,dtype=np.float64)) if val.ndim == 2: listbase.setContent(data, val.shape[1], val.shape[0], False) elif val.ndim == 1: listbase.setContent(data, val.shape[0]) else: raise Exception("Only 1 or 2 dimensions are allowed") elif isinstance(val, dict): if item == six.b('option') or item == six.b('options') or item == six.b('Option') or item == six.b('Options'): readOptions(root, val) else: itm = root.addChildNode(item) readDict(itm, val) else: if item == six.b('type'): root.addAttribute(< string > six.b('type'), wrap_to_bytes(val)) else: itm = root.addChildNode(item, wrap_to_bytes(val)) cdef void readOptions(XMLNode node, dc): cdef XMLNode listbase cdef XMLNode itm cdef int i cdef int j cdef double* data for item in dc: val = dc[item] if node.hasOption(item): raise Exception('Duplicate Option: %s' % item) if isinstance(val, list) or isinstance(val, tuple): val = np.array(val,dtype=np.float64) if isinstance(val, np.ndarray): if val.size == 0: break listbase = node.addChildNode(six.b('Option')) listbase.addAttribute(< string > six.b('key'), < string > item) data = np.PyArray_DATA(np.ascontiguousarray(val,dtype=np.float64)) if val.ndim == 2: listbase.setContent(data, val.shape[1], val.shape[0], False) elif val.ndim == 1: listbase.setContent(data, val.shape[0]) else: raise Exception("Only 1 or 2 dimensions are allowed") else: node.addOption(item, wrap_to_bytes(val)) cdef configToDict(Config *cfg): return XMLNode2dict(cfg.self)