/*
-----------------------------------------------------------------------
Copyright: 2010-2016, iMinds-Vision Lab, University of Antwerp
2014-2016, CWI, Amsterdam
Contact: astra@uantwerpen.be
Website: http://www.astra-toolbox.com/
This file is part of the ASTRA Toolbox.
The ASTRA Toolbox is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
The ASTRA Toolbox is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with the ASTRA Toolbox. If not, see .
-----------------------------------------------------------------------
*/
#include
#include
#include "cgls.h"
#include "util.h"
#include "arith.h"
#ifdef STANDALONE
#include "testutil.h"
#endif
namespace astraCUDA {
CGLS::CGLS() : ReconAlgo()
{
D_z = 0;
D_p = 0;
D_r = 0;
D_w = 0;
sliceInitialized = false;
}
CGLS::~CGLS()
{
reset();
}
void CGLS::reset()
{
cudaFree(D_z);
cudaFree(D_p);
cudaFree(D_r);
cudaFree(D_w);
D_z = 0;
D_p = 0;
D_r = 0;
D_w = 0;
ReconAlgo::reset();
}
bool CGLS::init()
{
// Lifetime of z: within an iteration
allocateVolumeData(D_z, zPitch, dims);
// Lifetime of p: full algorithm
allocateVolumeData(D_p, pPitch, dims);
// Lifetime of r: full algorithm
allocateProjectionData(D_r, rPitch, dims);
// Lifetime of w: within an iteration
allocateProjectionData(D_w, wPitch, dims);
// TODO: check if allocations succeeded
return true;
}
bool CGLS::setBuffers(float* _D_volumeData, unsigned int _volumePitch,
float* _D_projData, unsigned int _projPitch)
{
bool ok = ReconAlgo::setBuffers(_D_volumeData, _volumePitch,
_D_projData, _projPitch);
if (!ok)
return false;
sliceInitialized = false;
return true;
}
bool CGLS::copyDataToGPU(const float* pfSinogram, unsigned int iSinogramPitch, float fSinogramScale,
const float* pfReconstruction, unsigned int iReconstructionPitch,
const float* pfVolMask, unsigned int iVolMaskPitch,
const float* pfSinoMask, unsigned int iSinoMaskPitch)
{
sliceInitialized = false;
return ReconAlgo::copyDataToGPU(pfSinogram, iSinogramPitch, fSinogramScale, pfReconstruction, iReconstructionPitch, pfVolMask, iVolMaskPitch, pfSinoMask, iSinoMaskPitch);
}
bool CGLS::iterate(unsigned int iterations)
{
shouldAbort = false;
if (!sliceInitialized) {
// copy sinogram
duplicateProjectionData(D_r, D_sinoData, sinoPitch, dims);
// r = sino - A*x
if (useVolumeMask) {
// Use z as temporary storage here since it is unused
duplicateVolumeData(D_z, D_volumeData, volumePitch, dims);
processVol(D_z, D_maskData, zPitch, dims);
callFP(D_z, zPitch, D_r, rPitch, -1.0f);
} else {
callFP(D_volumeData, volumePitch, D_r, rPitch, -1.0f);
}
// p = A'*r
zeroVolumeData(D_p, pPitch, dims);
callBP(D_p, pPitch, D_r, rPitch, 1.0f);
if (useVolumeMask)
processVol(D_p, D_maskData, pPitch, dims);
gamma = dotProduct2D(D_p, pPitch, dims.iVolWidth, dims.iVolHeight);
sliceInitialized = true;
}
// iteration
for (unsigned int iter = 0; iter < iterations && !shouldAbort; ++iter) {
// w = A*p
zeroProjectionData(D_w, wPitch, dims);
callFP(D_p, pPitch, D_w, wPitch, 1.0f);
// alpha = gamma /
float ww = dotProduct2D(D_w, wPitch, dims.iProjDets, dims.iProjAngles);
float alpha = gamma / ww;
// x += alpha*p
processVol(D_volumeData, D_p, alpha, volumePitch, dims);
// r -= alpha*w
processSino(D_r, D_w, -alpha, rPitch, dims);
// z = A'*r
zeroVolumeData(D_z, zPitch, dims);
callBP(D_z, zPitch, D_r, rPitch, 1.0f);
if (useVolumeMask)
processVol(D_z, D_maskData, zPitch, dims);
float beta = 1.0f / gamma;
gamma = dotProduct2D(D_z, zPitch, dims.iVolWidth, dims.iVolHeight);
beta *= gamma;
// p = z + beta*p
processVol(D_p, D_z, beta, pPitch, dims);
}
return true;
}
float CGLS::computeDiffNorm()
{
// We can use w and z as temporary storage here since they're not
// used outside of iterations.
// copy sinogram to w
duplicateProjectionData(D_w, D_sinoData, sinoPitch, dims);
// do FP, subtracting projection from sinogram
if (useVolumeMask) {
duplicateVolumeData(D_z, D_volumeData, volumePitch, dims);
processVol(D_z, D_maskData, zPitch, dims);
callFP(D_z, zPitch, D_w, wPitch, -1.0f);
} else {
callFP(D_volumeData, volumePitch, D_w, wPitch, -1.0f);
}
// compute norm of D_w
float s = dotProduct2D(D_w, wPitch, dims.iProjDets, dims.iProjAngles);
return sqrt(s);
}
bool doCGLS(float* D_volumeData, unsigned int volumePitch,
float* D_sinoData, unsigned int sinoPitch,
const SDimensions& dims, /*const SAugmentedData& augs,*/
const float* angles, const float* TOffsets, unsigned int iterations)
{
CGLS cgls;
bool ok = true;
ok &= cgls.setGeometry(dims, angles);
#if 0
if (D_maskData)
ok &= cgls.enableVolumeMask();
#endif
if (TOffsets)
ok &= cgls.setTOffsets(TOffsets);
if (!ok)
return false;
ok = cgls.init();
if (!ok)
return false;
#if 0
if (D_maskData)
ok &= cgls.setVolumeMask(D_maskData, maskPitch);
#endif
ok &= cgls.setBuffers(D_volumeData, volumePitch, D_sinoData, sinoPitch);
if (!ok)
return false;
ok = cgls.iterate(iterations);
return ok;
}
}
#ifdef STANDALONE
using namespace astraCUDA;
int main()
{
float* D_volumeData;
float* D_sinoData;
SDimensions dims;
dims.iVolWidth = 1024;
dims.iVolHeight = 1024;
dims.iProjAngles = 512;
dims.iProjDets = 1536;
dims.fDetScale = 1.0f;
dims.iRaysPerDet = 1;
unsigned int volumePitch, sinoPitch;
allocateVolume(D_volumeData, dims.iVolWidth, dims.iVolHeight, volumePitch);
zeroVolume(D_volumeData, volumePitch, dims.iVolWidth, dims.iVolHeight);
printf("pitch: %u\n", volumePitch);
allocateVolume(D_sinoData, dims.iProjDets, dims.iProjAngles, sinoPitch);
zeroVolume(D_sinoData, sinoPitch, dims.iProjDets, dims.iProjAngles);
printf("pitch: %u\n", sinoPitch);
unsigned int y, x;
float* sino = loadImage("sino.png", y, x);
float* img = new float[dims.iVolWidth*dims.iVolHeight];
copySinogramToDevice(sino, dims.iProjDets, dims.iProjDets, dims.iProjAngles, D_sinoData, sinoPitch);
float* angle = new float[dims.iProjAngles];
for (unsigned int i = 0; i < dims.iProjAngles; ++i)
angle[i] = i*(M_PI/dims.iProjAngles);
CGLS cgls;
cgls.setGeometry(dims, angle);
cgls.init();
cgls.setBuffers(D_volumeData, volumePitch, D_sinoData, sinoPitch);
cgls.iterate(25);
delete[] angle;
copyVolumeFromDevice(img, dims.iVolWidth, dims.iVolWidth, dims.iVolHeight, D_volumeData, volumePitch);
saveImage("vol.png",dims.iVolHeight,dims.iVolWidth,img);
return 0;
}
#endif