From 86ad56f005d9d3871f654390739459d5634dd5d5 Mon Sep 17 00:00:00 2001 From: Willem Jan Palenstijn Date: Wed, 13 May 2015 11:52:28 +0200 Subject: Sync README.txt with README.md --- README.txt | 9 ++++++--- 1 file changed, 6 insertions(+), 3 deletions(-) (limited to 'README.txt') diff --git a/README.txt b/README.txt index 2877594..eae5085 100644 --- a/README.txt +++ b/README.txt @@ -90,11 +90,14 @@ Install by copying AstraCuda32.dll or AstraCuda64.dll from bin/ and References: ------------ -If you use parallel beam GPU code for your research, we would appreciate it if -you would refer to the following paper: +If you use the ASTRA Toolbox for your research, we would appreciate it if you would refer to the following paper: + +W. van Aarle, W. J. Palenstijn, J. De Beenhouwer, T. Altantzis, S. Bals, K J. Batenburg, and J. Sijbers, "The ASTRA Toolbox: A platform for advanced algorithm development in electron tomography", Ultramicroscopy (2015), http://dx.doi.org/10.1016/j.ultramic.2015.05.002 + +Additionally, if you use parallel beam GPU code, we would appreciate it if you would refer to the following paper: W. J. Palenstijn, K J. Batenburg, and J. Sijbers, "Performance improvements for iterative electron tomography reconstruction using graphics processing units (GPUs)", Journal of Structural Biology, vol. 176, issue 2, pp. 250-253, -2011 +2011, http://dx.doi.org/10.1016/j.jsb.2011.07.017 -- cgit v1.2.3 From 2ff0de757c6e5ba87247f566aa68bc928672ae37 Mon Sep 17 00:00:00 2001 From: Willem Jan Palenstijn Date: Wed, 20 May 2015 09:06:13 +0200 Subject: Add note about autogen.sh --- README.txt | 1 + 1 file changed, 1 insertion(+) (limited to 'README.txt') diff --git a/README.txt b/README.txt index eae5085..5ec6564 100644 --- a/README.txt +++ b/README.txt @@ -52,6 +52,7 @@ Linux, from source: Requirements: g++, boost, CUDA (driver+toolkit), matlab cd build/linux +./autogen.sh # when building a git version ./configure --with-cuda=/usr/local/cuda \ --with-matlab=/usr/local/MATLAB/R2012a \ --prefix=/usr/local/astra -- cgit v1.2.3 From 0bcde21948d619e9803de229ea40499b5e1dd873 Mon Sep 17 00:00:00 2001 From: Willem Jan Palenstijn Date: Wed, 27 May 2015 11:54:04 +0200 Subject: Update README, NEWS --- README.txt | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) (limited to 'README.txt') diff --git a/README.txt b/README.txt index 5ec6564..4be7ba0 100644 --- a/README.txt +++ b/README.txt @@ -49,18 +49,20 @@ Add the mex and tools subdirectories to your matlab path. Linux, from source: -------------------- -Requirements: g++, boost, CUDA (driver+toolkit), matlab +Requirements: g++, boost, CUDA (driver+toolkit), Matlab and/or Python (2.7 or 3.x) cd build/linux ./autogen.sh # when building a git version ./configure --with-cuda=/usr/local/cuda \ --with-matlab=/usr/local/MATLAB/R2012a \ + --with-python \ --prefix=/usr/local/astra make make install Add /usr/local/astra/lib to your LD_LIBRARY_PATH. Add /usr/local/astra/matlab and its subdirectories (tools, mex) to your matlab path. +Add /usr/local/astra/python to your PYTHONPATH. NB: Each matlab version only supports a specific range of g++ versions. -- cgit v1.2.3