Merge pull request #101 from wjp/composite

 Add CompositeGeometryManager

7 files changed, 220 insertions, 10 deletions

diff --git a/include/astra/CompositeGeometryManager.h b/include/astra/CompositeGeometryManager.h
new file mode 100644
index 0000000..6610151
--- /dev/null
+++ b/include/astra/CompositeGeometryManager.h
@@ -0,0 +1,152 @@
+/*
+-----------------------------------------------------------------------
+Copyright: 2010-2015, iMinds-Vision Lab, University of Antwerp
+           2014-2015, CWI, Amsterdam
+
+Contact: astra@uantwerpen.be
+Website: http://sf.net/projects/astra-toolbox
+
+This file is part of the ASTRA Toolbox.
+
+
+The ASTRA Toolbox is free software: you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation, either version 3 of the License, or
+(at your option) any later version.
+
+The ASTRA Toolbox is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License
+along with the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
+
+-----------------------------------------------------------------------
+*/
+
+#ifndef _INC_ASTRA_COMPOSITEGEOMETRYMANAGER
+#define _INC_ASTRA_COMPOSITEGEOMETRYMANAGER
+
+#include "Globals.h"
+
+#ifdef ASTRA_CUDA
+
+#include <list>
+#include <map>
+#include <vector>
+#include <boost/shared_ptr.hpp>
+
+
+namespace astra {
+
+class CCompositeVolume;
+class CCompositeProjections;
+class CFloat32Data3DMemory;
+class CFloat32ProjectionData3DMemory;
+class CFloat32VolumeData3DMemory;
+class CVolumeGeometry3D;
+class CProjectionGeometry3D;
+class CProjector3D;
+
+
+
+class _AstraExport CCompositeGeometryManager {
+public:
+	class CPart;
+	typedef std::list<boost::shared_ptr<CPart> > TPartList;
+	class CPart {
+	public:
+		CPart() { }
+		CPart(const CPart& other);
+		virtual ~CPart() { }
+
+		enum {
+			PART_VOL, PART_PROJ
+		} eType;
+
+		CFloat32Data3DMemory* pData;
+		unsigned int subX;
+		unsigned int subY;
+		unsigned int subZ;
+
+		bool uploadToGPU();
+		bool downloadFromGPU(/*mode?*/);
+		virtual TPartList split(size_t maxSize, int div) = 0;
+		virtual CPart* reduce(const CPart *other) = 0;
+		virtual void getDims(size_t &x, size_t &y, size_t &z) = 0;
+		size_t getSize();
+	};
+
+	class CVolumePart : public CPart {
+	public:
+		CVolumePart() { eType = PART_VOL; }
+		CVolumePart(const CVolumePart& other);
+		virtual ~CVolumePart();
+
+		CVolumeGeometry3D* pGeom;
+
+		virtual TPartList split(size_t maxSize, int div);
+		virtual CPart* reduce(const CPart *other);
+		virtual void getDims(size_t &x, size_t &y, size_t &z);
+
+		CVolumePart* clone() const;
+	};
+	class CProjectionPart : public CPart {
+	public:
+		CProjectionPart() { eType = PART_PROJ; }
+		CProjectionPart(const CProjectionPart& other);
+		virtual ~CProjectionPart();
+
+		CProjectionGeometry3D* pGeom;
+
+		virtual TPartList split(size_t maxSize, int div);
+		virtual CPart* reduce(const CPart *other);
+		virtual void getDims(size_t &x, size_t &y, size_t &z);
+
+		CProjectionPart* clone() const;
+	};
+
+	struct SJob {
+	public:
+		boost::shared_ptr<CPart> pInput;
+		boost::shared_ptr<CPart> pOutput;
+		CProjector3D *pProjector; // For a `global' geometry. It will not match
+		                          // the geometries of the input and output.
+
+
+		enum {
+			JOB_FP, JOB_BP, JOB_NOP
+		} eType;
+		enum {
+			MODE_ADD, MODE_SET
+		} eMode;
+
+	};
+
+	typedef std::list<SJob> TJobList;
+	// output part -> list of jobs for that output
+	typedef std::map<CPart*, TJobList > TJobSet;
+
+	bool doJobs(TJobList &jobs);
+
+	// Convenience functions for creating and running a single FP or BP job
+	bool doFP(CProjector3D *pProjector, CFloat32VolumeData3DMemory *pVolData,
+	          CFloat32ProjectionData3DMemory *pProjData);
+	bool doBP(CProjector3D *pProjector, CFloat32VolumeData3DMemory *pVolData,
+	          CFloat32ProjectionData3DMemory *pProjData);
+
+	bool doFP(CProjector3D *pProjector, const std::vector<CFloat32VolumeData3DMemory *>& volData, const std::vector<CFloat32ProjectionData3DMemory *>& projData);
+	bool doBP(CProjector3D *pProjector, const std::vector<CFloat32VolumeData3DMemory *>& volData, const std::vector<CFloat32ProjectionData3DMemory *>& projData);
+
+protected:
+
+	bool splitJobs(TJobSet &jobs, size_t maxSize, int div, TJobSet &split);
+
+};
+
+}
+
+#endif
+
+#endif
diff --git a/include/astra/ConeProjectionGeometry3D.h b/include/astra/ConeProjectionGeometry3D.h
index 00e72ce..dede6e1 100644
--- a/include/astra/ConeProjectionGeometry3D.h
+++ b/include/astra/ConeProjectionGeometry3D.h
@@ -186,9 +186,15 @@ public:
 	 */
 	virtual CVector3D getProjectionDirection(int _iProjectionIndex, int _iDetectorIndex) const;
 
-	virtual void projectPoint(float32 fX, float32 fY, float32 fZ,
+	virtual void projectPoint(double fX, double fY, double fZ,
 	                          int iAngleIndex,
-	                          float32 &fU, float32 &fV) const;
+	                          double &fU, double &fV) const;
+	virtual void backprojectPointX(int iAngleIndex, double fU, double fV,
+	                               double fX, double &fY, double &fZ) const;
+	virtual void backprojectPointY(int iAngleIndex, double fU, double fV,
+	                               double fY, double &fX, double &fZ) const;
+	virtual void backprojectPointZ(int iAngleIndex, double fU, double fV,
+	                               double fZ, double &fX, double &fY) const;
 
 };
 
diff --git a/include/astra/ConeVecProjectionGeometry3D.h b/include/astra/ConeVecProjectionGeometry3D.h
index 71e8010..f76f9dd 100644
--- a/include/astra/ConeVecProjectionGeometry3D.h
+++ b/include/astra/ConeVecProjectionGeometry3D.h
@@ -148,9 +148,16 @@ public:
 
 	const SConeProjection* getProjectionVectors() const { return m_pProjectionAngles; }
 
-	virtual void projectPoint(float32 fX, float32 fY, float32 fZ,
+	virtual void projectPoint(double fX, double fY, double fZ,
 	                          int iAngleIndex,
-	                          float32 &fU, float32 &fV) const;
+	                          double &fU, double &fV) const;
+	virtual void backprojectPointX(int iAngleIndex, double fU, double fV,
+	                               double fX, double &fY, double &fZ) const;
+	virtual void backprojectPointY(int iAngleIndex, double fU, double fV,
+	                               double fY, double &fX, double &fZ) const;
+	virtual void backprojectPointZ(int iAngleIndex, double fU, double fV,
+	                               double fZ, double &fX, double &fY) const;
+
 };
 
 } // namespace astra
diff --git a/include/astra/GeometryUtil3D.h b/include/astra/GeometryUtil3D.h
index 6ceac63..e4d73e4 100644
--- a/include/astra/GeometryUtil3D.h
+++ b/include/astra/GeometryUtil3D.h
@@ -119,6 +119,23 @@ void computeBP_UV_Coeffs(const SConeProjection& proj,
                          double &fDX, double &fDY, double &fDZ, double &fDC);
 
 
+SConeProjection* genConeProjections(unsigned int iProjAngles,
+                                    unsigned int iProjU,
+                                    unsigned int iProjV,
+                                    double fOriginSourceDistance,
+                                    double fOriginDetectorDistance,
+                                    double fDetUSize,
+                                    double fDetVSize,
+                                    const float *pfAngles);
+
+SPar3DProjection* genPar3DProjections(unsigned int iProjAngles,
+                                      unsigned int iProjU,
+                                      unsigned int iProjV,
+                                      double fDetUSize,
+                                      double fDetVSize,
+                                      const float *pfAngles);
+
+
 
 
 }
diff --git a/include/astra/ParallelProjectionGeometry3D.h b/include/astra/ParallelProjectionGeometry3D.h
index 72401e5..d95c050 100644
--- a/include/astra/ParallelProjectionGeometry3D.h
+++ b/include/astra/ParallelProjectionGeometry3D.h
@@ -147,9 +147,16 @@ public:
 	  */
 	virtual CVector3D getProjectionDirection(int _iProjectionIndex, int _iDetectorIndex) const;
 
-	virtual void projectPoint(float32 fX, float32 fY, float32 fZ,
+	virtual void projectPoint(double fX, double fY, double fZ,
 	                          int iAngleIndex,
-	                          float32 &fU, float32 &fV) const;
+	                          double &fU, double &fV) const;
+	virtual void backprojectPointX(int iAngleIndex, double fU, double fV,
+	                               double fX, double &fY, double &fZ) const;
+	virtual void backprojectPointY(int iAngleIndex, double fU, double fV,
+	                               double fY, double &fX, double &fZ) const;
+	virtual void backprojectPointZ(int iAngleIndex, double fU, double fV,
+	                               double fZ, double &fX, double &fY) const;
+
 
 	 /**
 	  * Creates (= allocates) a 2D projection geometry used when projecting one slice using a 2D projector
diff --git a/include/astra/ParallelVecProjectionGeometry3D.h b/include/astra/ParallelVecProjectionGeometry3D.h
index 59238c8..ec91086 100644
--- a/include/astra/ParallelVecProjectionGeometry3D.h
+++ b/include/astra/ParallelVecProjectionGeometry3D.h
@@ -149,9 +149,15 @@ public:
 
 	const SPar3DProjection* getProjectionVectors() const { return m_pProjectionAngles; }
 
-	virtual void projectPoint(float32 fX, float32 fY, float32 fZ,
+	virtual void projectPoint(double fX, double fY, double fZ,
 	                          int iAngleIndex,
-	                          float32 &fU, float32 &fV) const;
+	                          double &fU, double &fV) const;
+	virtual void backprojectPointX(int iAngleIndex, double fU, double fV,
+	                               double fX, double &fY, double &fZ) const;
+	virtual void backprojectPointY(int iAngleIndex, double fU, double fV,
+	                               double fY, double &fX, double &fZ) const;
+	virtual void backprojectPointZ(int iAngleIndex, double fU, double fV,
+	                               double fZ, double &fX, double &fY) const;
 };
 
 } // namespace astra
diff --git a/include/astra/ProjectionGeometry3D.h b/include/astra/ProjectionGeometry3D.h
index 19ac3ab..0b60287 100644
--- a/include/astra/ProjectionGeometry3D.h
+++ b/include/astra/ProjectionGeometry3D.h
@@ -317,9 +317,24 @@ public:
 	 * @param iAngleIndex	the index of the angle to use
 	 * @param fU,fV		the projected point.
 	 */
-	virtual void projectPoint(float32 fX, float32 fY, float32 fZ,
+	virtual void projectPoint(double fX, double fY, double fZ,
 	                          int iAngleIndex,
-	                          float32 &fU, float32 &fV) const = 0;
+	                          double &fU, double &fV) const = 0;
+
+	/* Backproject a point onto a plane parallel to a coordinate plane.
+	 * The 2D point coordinates are the (unrounded) indices of the detector
+	 * column and row. The output is in 3D coordinates in units.
+	 * are in units. The output fU,fV are the (unrounded) indices of the
+	 * detector column and row.
+	 * This may fall outside of the actual detector.
+	 */
+	virtual void backprojectPointX(int iAngleIndex, double fU, double fV,
+	                               double fX, double &fY, double &fZ) const = 0;
+	virtual void backprojectPointY(int iAngleIndex, double fU, double fV,
+	                               double fY, double &fX, double &fZ) const = 0;
+	virtual void backprojectPointZ(int iAngleIndex, double fU, double fV,
+	                               double fZ, double &fX, double &fY) const = 0;
+
 
 	/** Returns true if the type of geometry defined in this class is the one specified in _sType.
 	 *