Commit message (Collapse) | Author | Age | Files | Lines | |
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* | Code from Harish (largely untested)harish | Suren A. Chilingaryan | 2022-07-26 | 26 | -45/+4103 |
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* | reader: turn warnings to errors | Tomas Farago | 2021-12-17 | 1 | -6/+8 |
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* | read: check sizes on get_meta | Tomas Farago | 2021-12-17 | 1 | -17/+16 |
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* | Merge pull request #218 from ufo-kit/horizontal-interpolate-just-copy | Tomas Farago | 2021-12-15 | 3 | -14/+91 |
|\ | | | | | horizontal-interpolate: add use-one-sided-gradient | ||||
| * | horizontal-interpolate: add use-one-sided-gradient | Tomas Farago | 2021-12-15 | 3 | -14/+91 |
|/ | | | | | Which gives finer contol over what happens when the mask spans to the border. | ||||
* | Merge pull request #216 from ufo-kit/image-step | Tomas Farago | 2021-12-07 | 13 | -129/+279 |
|\ | | | | | Image step | ||||
| * | docs: remove retries and retry-timeout | Tomas Farago | 2021-12-03 | 1 | -12/+0 |
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| * | read: remove retries | Tomas Farago | 2021-12-03 | 1 | -72/+3 |
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| * | Test multi-image readers | Tomas Farago | 2021-12-01 | 5 | -1/+120 |
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| * | read: add image-start and image-step properties | Tomas Farago | 2021-12-01 | 8 | -78/+190 |
| | | | | | | | | to skip images in multi-image files. Fixes #164. | ||||
* | | Merge pull request #217 from ufo-kit/multidistance-phase-retrieval | Tomas Farago | 2021-12-03 | 3 | -28/+182 |
|\ \ | |/ |/| | retrieve-phase: Add multi-distance CTF support | ||||
| * | retrieve-phase: Add multi-distance CTF support | Tomas Farago | 2021-12-03 | 3 | -28/+182 |
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* | docs: replace l_ with _ in sphinx | Tomas Farago | 2021-12-01 | 1 | -3/+3 |
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* | reader: handle large y-step and small height | Tomas Farago | 2021-11-10 | 2 | -3/+5 |
| | | | | extreme cases like y-step=20 and height=1 resulted in a segfault. | ||||
* | Merge pull request #214 from harishkumar-harihara/add-stacked-backproject | Tomas Farago | 2021-10-19 | 7 | -0/+1217 |
|\ | | | | | add stacked-backproject | ||||
| * | add stacked-backproject | harishkumar-harihara | 2021-10-17 | 7 | -0/+1217 |
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* | | flatten: complain when input is 2D | Tomas Farago | 2021-10-19 | 1 | -0/+7 |
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* | | Merge pull request #213 from ufo-kit/fix-stack | Tomas Farago | 2021-10-06 | 2 | -4/+26 |
|\ \ | |/ |/| | stack: force nonfactor generation | ||||
| * | stack: force nonfactor generation | Tomas Farago | 2021-09-27 | 2 | -4/+26 |
|/ | | | | | | | | If the number of images in the stack hadn't been a divisor of the number of input images, the last images would have been dropped. This makes sure all images are processed and fills the last positions of the stack (when the total number of stacked images starts to exceed the number of input images) with arbitrary previous images. Fixes #210. | ||||
* | pad: Add mirrored_repeat to the list | Tomas Farago | 2021-09-09 | 1 | -2/+2 |
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* | stripe-filter: add vertical sigma parameter | Tomas Farago | 2021-09-09 | 3 | -22/+56 |
| | | | | | | Which allows filtering of rings which are not perfectly straight or which are broader. vertical-sigma parameter roughly specifies the inclination from "perfectly vertical" stripes. | ||||
* | genreco: add spacial code for shifted source/det | Tomas Farago | 2021-03-26 | 1 | -20/+44 |
| | | | | not just for non-perpendicular detector. | ||||
* | opencl.cl: Add add, multiply and divide | Tomas Farago | 2021-01-28 | 1 | -0/+27 |
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* | general BP: don't hard-code local work size | Tomas Farago | 2020-11-11 | 1 | -1/+12 |
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* | read: make raw defaults the same as in raw-reader | Tomas Farago | 2020-08-28 | 1 | -3/+3 |
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* | write: add forgotten rescale to get_property | Tomas Farago | 2020-08-28 | 1 | -0/+3 |
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* | Merge pull request #207 from ufo-kit/non-dash-task-names | Tomas Farago | 2020-08-27 | 4 | -22/+14 |
|\ | | | | | Don't force non-dash task names | ||||
| * | Don't force non-dash task names | Tomas Farago | 2020-08-14 | 4 | -22/+14 |
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* | Merge pull request #205 from ufo-kit/directional-phaseretrieval | Tomas Farago | 2020-06-25 | 3 | -12/+64 |
|\ | | | | | phase retrieval: enable separate x and y distance | ||||
| * | phase retrieval: enable separate x and y distance | Tomas Farago | 2020-06-04 | 3 | -12/+64 |
| | | | | | | | | fixes #203 | ||||
* | | Merge pull request #206 from ufo-kit/opencl-warning | Tomas Farago | 2020-06-16 | 109 | -3/+119 |
|\ \ | |/ |/| | Fix undefined CL_TARGET_OPENCL_VERSION warning | ||||
| * | Fix undefined CL_TARGET_OPENCL_VERSION warning | Tomas Farago | 2020-06-12 | 109 | -3/+119 |
|/ | | | | | | This is hardcoded to 120 (= OpenCL 1.2) because nvidia does not support later standards until 3.0 comes around and we do not make use of later features anyway. | ||||
* | backproject: unroll for navi10 | Matthias Vogelgesang | 2020-05-23 | 1 | -0/+3 |
| | | | | | With that an RX 5600 XT achieves ~22 slices/s according to the benchmark protocol from https://tomopedia.github.io/software/ufo. | ||||
* | Merge pull request #201 from ufo-kit/disable-opencl-reduce-copying | Tomas Farago | 2020-05-18 | 1 | -0/+22 |
|\ | | | | | Disable copying of opencl-reduce task | ||||
| * | Disable copying of opencl-reduce task | Tomas Farago | 2020-05-18 | 1 | -0/+22 |
|/ | | | | because one processing node needs all the inputs to reduce properly. | ||||
* | sliding-stack: document ordered parameter | Tomas Farago | 2020-04-09 | 1 | -4/+9 |
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* | Merge pull request #199 from ufo-kit/ordered-sliding-stack | Tomas Farago | 2020-04-08 | 1 | -2/+24 |
|\ | | | | | sliding-stack: allow ordering items | ||||
| * | sliding-stack: allow ordering items | Tomas Farago | 2020-04-08 | 1 | -2/+24 |
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* | Add multi-page parameters to writer docs | Tomas Farago | 2020-04-03 | 1 | -1/+13 |
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* | Merge pull request #198 from ufo-kit/sliding-window | Tomas Farago | 2020-04-03 | 5 | -0/+303 |
|\ | | | | | Add sliding-stack task | ||||
| * | Add sliding-stack task | Tomas Farago | 2020-03-20 | 5 | -0/+303 |
| | | | | | | | | fixes #196. | ||||
* | | GBP: complain if not enough projections come | Tomas Farago | 2020-03-31 | 1 | -1/+7 |
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* | med-mad-reject-2d: fix index overflow in sorting | Tomas Farago | 2020-03-19 | 1 | -2/+2 |
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* | Increase property limits to 32768 | Tomas Farago | 2020-03-13 | 10 | -21/+21 |
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* | Merge pull request #197 from ufo-kit/add-power-spectrum | Tomas Farago | 2020-03-06 | 6 | -5/+247 |
|\ | | | | | Add power-spectrum filter | ||||
| * | Add power-spectrum filter | Tomas Farago | 2020-03-06 | 6 | -5/+247 |
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* | complex: add c_abs_squared kernel | Tomas Farago | 2020-03-05 | 1 | -0/+13 |
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* | Merge pull request #194 from ufo-kit/conjugate | Tomas Farago | 2020-02-25 | 1 | -2/+4 |
|\ | | | | | Make c_conj work with opencl task | ||||
| * | Make c_conj work with opencl task | Tomas Farago | 2020-02-25 | 1 | -2/+4 |
|/ | | | | fixes #193 | ||||
* | write: handle stdout correctly | Tomas Farago | 2020-02-18 | 1 | -4/+12 |
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