1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
|
/*
-----------------------------------------------------------------------
Copyright: 2010-2018, iMinds-Vision Lab, University of Antwerp
2014-2018, CWI, Amsterdam
Contact: astra@astra-toolbox.com
Website: http://www.astra-toolbox.com/
This file is part of the ASTRA Toolbox.
The ASTRA Toolbox is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
The ASTRA Toolbox is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
-----------------------------------------------------------------------
*/
#include "astra/CudaBackProjectionAlgorithm3D.h"
#include "astra/AstraObjectManager.h"
#include "astra/CudaProjector3D.h"
#include "astra/ConeProjectionGeometry3D.h"
#include "astra/ParallelProjectionGeometry3D.h"
#include "astra/ParallelVecProjectionGeometry3D.h"
#include "astra/ConeVecProjectionGeometry3D.h"
#include "astra/CompositeGeometryManager.h"
#include "astra/Logging.h"
#include "../cuda/3d/astra3d.h"
using namespace std;
namespace astra {
// type of the algorithm, needed to register with CAlgorithmFactory
std::string CCudaBackProjectionAlgorithm3D::type = "BP3D_CUDA";
//----------------------------------------------------------------------------------------
// Constructor
CCudaBackProjectionAlgorithm3D::CCudaBackProjectionAlgorithm3D()
{
m_bIsInitialized = false;
m_iGPUIndex = -1;
m_iVoxelSuperSampling = 1;
m_bSIRTWeighting = false;
}
//----------------------------------------------------------------------------------------
// Constructor with initialization
CCudaBackProjectionAlgorithm3D::CCudaBackProjectionAlgorithm3D(CProjector3D* _pProjector,
CFloat32ProjectionData3D* _pProjectionData,
CFloat32VolumeData3D* _pReconstruction)
{
_clear();
initialize(_pProjector, _pProjectionData, _pReconstruction);
}
//----------------------------------------------------------------------------------------
// Destructor
CCudaBackProjectionAlgorithm3D::~CCudaBackProjectionAlgorithm3D()
{
CReconstructionAlgorithm3D::_clear();
}
//---------------------------------------------------------------------------------------
// Check
bool CCudaBackProjectionAlgorithm3D::_check()
{
// check base class
ASTRA_CONFIG_CHECK(CReconstructionAlgorithm3D::_check(), "BP3D_CUDA", "Error in ReconstructionAlgorithm3D initialization");
return true;
}
//---------------------------------------------------------------------------------------
void CCudaBackProjectionAlgorithm3D::initializeFromProjector()
{
m_iVoxelSuperSampling = 1;
m_iGPUIndex = -1;
CCudaProjector3D* pCudaProjector = dynamic_cast<CCudaProjector3D*>(m_pProjector);
if (!pCudaProjector) {
if (m_pProjector) {
ASTRA_WARN("non-CUDA Projector3D passed to BP3D_CUDA");
}
} else {
m_iVoxelSuperSampling = pCudaProjector->getVoxelSuperSampling();
m_iGPUIndex = pCudaProjector->getGPUIndex();
}
}
//---------------------------------------------------------------------------------------
// Initialize - Config
bool CCudaBackProjectionAlgorithm3D::initialize(const Config& _cfg)
{
ASTRA_ASSERT(_cfg.self);
ConfigStackCheck<CAlgorithm> CC("CudaBackProjectionAlgorithm3D", this, _cfg);
// if already initialized, clear first
if (m_bIsInitialized) {
clear();
}
// initialization of parent class
if (!CReconstructionAlgorithm3D::initialize(_cfg)) {
return false;
}
initializeFromProjector();
// Deprecated options
m_iVoxelSuperSampling = (int)_cfg.self.getOptionNumerical("VoxelSuperSampling", m_iVoxelSuperSampling);
m_iGPUIndex = (int)_cfg.self.getOptionNumerical("GPUindex", m_iGPUIndex);
m_iGPUIndex = (int)_cfg.self.getOptionNumerical("GPUIndex", m_iGPUIndex);
CC.markOptionParsed("VoxelSuperSampling");
CC.markOptionParsed("GPUIndex");
if (!_cfg.self.hasOption("GPUIndex"))
CC.markOptionParsed("GPUindex");
m_bSIRTWeighting = _cfg.self.getOptionBool("SIRTWeighting", false);
CC.markOptionParsed("SIRTWeighting");
// success
m_bIsInitialized = _check();
return m_bIsInitialized;
}
//----------------------------------------------------------------------------------------
// Initialize - C++
bool CCudaBackProjectionAlgorithm3D::initialize(CProjector3D* _pProjector,
CFloat32ProjectionData3D* _pSinogram,
CFloat32VolumeData3D* _pReconstruction)
{
// if already initialized, clear first
if (m_bIsInitialized) {
clear();
}
// required classes
m_pProjector = _pProjector;
m_pSinogram = _pSinogram;
m_pReconstruction = _pReconstruction;
initializeFromProjector();
// success
m_bIsInitialized = _check();
return m_bIsInitialized;
}
//---------------------------------------------------------------------------------------
// Information - All
map<string,boost::any> CCudaBackProjectionAlgorithm3D::getInformation()
{
map<string, boost::any> res;
return mergeMap<string,boost::any>(CAlgorithm::getInformation(), res);
};
//---------------------------------------------------------------------------------------
// Information - Specific
boost::any CCudaBackProjectionAlgorithm3D::getInformation(std::string _sIdentifier)
{
return CAlgorithm::getInformation(_sIdentifier);
};
//----------------------------------------------------------------------------------------
// Iterate
void CCudaBackProjectionAlgorithm3D::run(int _iNrIterations)
{
// check initialized
ASTRA_ASSERT(m_bIsInitialized);
CFloat32ProjectionData3D* pSinoMem = dynamic_cast<CFloat32ProjectionData3D*>(m_pSinogram);
ASTRA_ASSERT(pSinoMem);
CFloat32VolumeData3D* pReconMem = dynamic_cast<CFloat32VolumeData3D*>(m_pReconstruction);
ASTRA_ASSERT(pReconMem);
const CProjectionGeometry3D* projgeom = pSinoMem->getGeometry();
const CVolumeGeometry3D& volgeom = *pReconMem->getGeometry();
if (m_bSIRTWeighting) {
CFloat32ProjectionData3DMemory* pSinoMemory = dynamic_cast<CFloat32ProjectionData3DMemory*>(m_pSinogram);
ASTRA_ASSERT(pSinoMemory);
CFloat32VolumeData3DMemory* pReconMemory = dynamic_cast<CFloat32VolumeData3DMemory*>(m_pReconstruction);
ASTRA_ASSERT(pReconMemory);
astraCudaBP_SIRTWeighted(pReconMemory->getData(),
pSinoMemory->getDataConst(),
&volgeom, projgeom,
m_iGPUIndex, m_iVoxelSuperSampling);
} else {
#if 1
CCompositeGeometryManager cgm;
cgm.doBP(m_pProjector, pReconMem, pSinoMem);
#else
astraCudaBP(pReconMem->getData(), pSinoMem->getDataConst(),
&volgeom, projgeom,
m_iGPUIndex, m_iVoxelSuperSampling);
#endif
}
}
} // namespace astra
|