/* ----------------------------------------------------------------------- Copyright: 2010-2016, iMinds-Vision Lab, University of Antwerp 2014-2016, CWI, Amsterdam Contact: astra@astra-toolbox.com Website: http://www.astra-toolbox.com/ This file is part of the ASTRA Toolbox. The ASTRA Toolbox is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. The ASTRA Toolbox is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with the ASTRA Toolbox. If not, see . ----------------------------------------------------------------------- */ #include "astra/CudaSirtAlgorithm3D.h" #include "astra/AstraObjectManager.h" #include "astra/ConeProjectionGeometry3D.h" #include "astra/ParallelProjectionGeometry3D.h" #include "astra/ParallelVecProjectionGeometry3D.h" #include "astra/ConeVecProjectionGeometry3D.h" #include "astra/CudaProjector3D.h" #include "astra/Logging.h" #include "../cuda/3d/astra3d.h" using namespace std; namespace astra { // type of the algorithm, needed to register with CAlgorithmFactory std::string CCudaSirtAlgorithm3D::type = "SIRT3D_CUDA"; //---------------------------------------------------------------------------------------- // Constructor CCudaSirtAlgorithm3D::CCudaSirtAlgorithm3D() { m_bIsInitialized = false; m_pSirt = 0; m_iGPUIndex = -1; m_iVoxelSuperSampling = 1; m_iDetectorSuperSampling = 1; m_fLambda = 1.0f; } //---------------------------------------------------------------------------------------- // Constructor with initialization CCudaSirtAlgorithm3D::CCudaSirtAlgorithm3D(CProjector3D* _pProjector, CFloat32ProjectionData3DMemory* _pProjectionData, CFloat32VolumeData3DMemory* _pReconstruction) { _clear(); initialize(_pProjector, _pProjectionData, _pReconstruction); } //---------------------------------------------------------------------------------------- // Destructor CCudaSirtAlgorithm3D::~CCudaSirtAlgorithm3D() { delete m_pSirt; m_pSirt = 0; CReconstructionAlgorithm3D::_clear(); } //--------------------------------------------------------------------------------------- // Check bool CCudaSirtAlgorithm3D::_check() { // check base class ASTRA_CONFIG_CHECK(CReconstructionAlgorithm3D::_check(), "SIRT3D", "Error in ReconstructionAlgorithm3D initialization"); return true; } //---------------------------------------------------------------------------------------- void CCudaSirtAlgorithm3D::initializeFromProjector() { m_iVoxelSuperSampling = 1; m_iDetectorSuperSampling = 1; m_iGPUIndex = -1; CCudaProjector3D* pCudaProjector = dynamic_cast(m_pProjector); if (!pCudaProjector) { if (m_pProjector) { ASTRA_WARN("non-CUDA Projector3D passed to SIRT3D_CUDA"); } } else { m_iVoxelSuperSampling = pCudaProjector->getVoxelSuperSampling(); m_iDetectorSuperSampling = pCudaProjector->getDetectorSuperSampling(); m_iGPUIndex = pCudaProjector->getGPUIndex(); } } //-------------------------------------------------------------------------------------- // Initialize - Config bool CCudaSirtAlgorithm3D::initialize(const Config& _cfg) { ASTRA_ASSERT(_cfg.self); ConfigStackCheck CC("CudaSirtAlgorithm3D", this, _cfg); // if already initialized, clear first if (m_bIsInitialized) { clear(); } // initialization of parent class if (!CReconstructionAlgorithm3D::initialize(_cfg)) { return false; } m_fLambda = _cfg.self.getOptionNumerical("Relaxation"); initializeFromProjector(); // Deprecated options m_iVoxelSuperSampling = (int)_cfg.self.getOptionNumerical("VoxelSuperSampling", m_iVoxelSuperSampling); m_iDetectorSuperSampling = (int)_cfg.self.getOptionNumerical("DetectorSuperSampling", m_iDetectorSuperSampling); m_iGPUIndex = (int)_cfg.self.getOptionNumerical("GPUindex", m_iGPUIndex); m_iGPUIndex = (int)_cfg.self.getOptionNumerical("GPUIndex", m_iGPUIndex); CC.markOptionParsed("VoxelSuperSampling"); CC.markOptionParsed("DetectorSuperSampling"); CC.markOptionParsed("GPUIndex"); if (!_cfg.self.hasOption("GPUIndex")) CC.markOptionParsed("GPUindex"); m_pSirt = new AstraSIRT3d(); m_bAstraSIRTInit = false; // success m_bIsInitialized = _check(); return m_bIsInitialized; } //---------------------------------------------------------------------------------------- // Initialize - C++ bool CCudaSirtAlgorithm3D::initialize(CProjector3D* _pProjector, CFloat32ProjectionData3DMemory* _pSinogram, CFloat32VolumeData3DMemory* _pReconstruction) { // if already initialized, clear first if (m_bIsInitialized) { clear(); } m_fLambda = 1.0f; // required classes m_pProjector = _pProjector; m_pSinogram = _pSinogram; m_pReconstruction = _pReconstruction; m_pSirt = new AstraSIRT3d; m_bAstraSIRTInit = false; // success m_bIsInitialized = _check(); return m_bIsInitialized; } //--------------------------------------------------------------------------------------- // Information - All map CCudaSirtAlgorithm3D::getInformation() { map res; return mergeMap(CAlgorithm::getInformation(), res); }; //--------------------------------------------------------------------------------------- // Information - Specific boost::any CCudaSirtAlgorithm3D::getInformation(std::string _sIdentifier) { return CAlgorithm::getInformation(_sIdentifier); }; //---------------------------------------------------------------------------------------- // Iterate void CCudaSirtAlgorithm3D::run(int _iNrIterations) { // check initialized ASTRA_ASSERT(m_bIsInitialized); const CProjectionGeometry3D* projgeom = m_pSinogram->getGeometry(); const CVolumeGeometry3D& volgeom = *m_pReconstruction->getGeometry(); bool ok = true; if (!m_bAstraSIRTInit) { ok &= m_pSirt->setGPUIndex(m_iGPUIndex); ok &= m_pSirt->setGeometry(&volgeom, projgeom); ok &= m_pSirt->enableSuperSampling(m_iVoxelSuperSampling, m_iDetectorSuperSampling); if (m_bUseReconstructionMask) ok &= m_pSirt->enableVolumeMask(); if (m_bUseSinogramMask) ok &= m_pSirt->enableSinogramMask(); ASTRA_ASSERT(ok); ok &= m_pSirt->init(); ASTRA_ASSERT(ok); m_pSirt->setRelaxation(m_fLambda); m_bAstraSIRTInit = true; } CFloat32ProjectionData3DMemory* pSinoMem = dynamic_cast(m_pSinogram); ASTRA_ASSERT(pSinoMem); ok = m_pSirt->setSinogram(pSinoMem->getDataConst(), m_pSinogram->getGeometry()->getDetectorColCount()); ASTRA_ASSERT(ok); if (m_bUseReconstructionMask) { CFloat32VolumeData3DMemory* pRMaskMem = dynamic_cast(m_pReconstructionMask); ASTRA_ASSERT(pRMaskMem); ok &= m_pSirt->setVolumeMask(pRMaskMem->getDataConst(), volgeom.getGridColCount()); } if (m_bUseSinogramMask) { CFloat32ProjectionData3DMemory* pSMaskMem = dynamic_cast(m_pSinogramMask); ASTRA_ASSERT(pSMaskMem); ok &= m_pSirt->setSinogramMask(pSMaskMem->getDataConst(), m_pSinogramMask->getGeometry()->getDetectorColCount()); } CFloat32VolumeData3DMemory* pReconMem = dynamic_cast(m_pReconstruction); ASTRA_ASSERT(pReconMem); ok &= m_pSirt->setStartReconstruction(pReconMem->getDataConst(), volgeom.getGridColCount()); ASTRA_ASSERT(ok); if (m_bUseMinConstraint) ok &= m_pSirt->setMinConstraint(m_fMinValue); if (m_bUseMaxConstraint) ok &= m_pSirt->setMaxConstraint(m_fMaxValue); ok &= m_pSirt->iterate(_iNrIterations); ASTRA_ASSERT(ok); ok &= m_pSirt->getReconstruction(pReconMem->getData(), volgeom.getGridColCount()); ASTRA_ASSERT(ok); } //---------------------------------------------------------------------------------------- void CCudaSirtAlgorithm3D::signalAbort() { if (m_bIsInitialized && m_pSirt) { m_pSirt->signalAbort(); } } bool CCudaSirtAlgorithm3D::getResidualNorm(float32& _fNorm) { if (!m_bIsInitialized || !m_pSirt) return false; _fNorm = m_pSirt->computeDiffNorm(); return true; } } // namespace astra