/*
-----------------------------------------------------------------------
Copyright: 2010-2018, iMinds-Vision Lab, University of Antwerp
2014-2018, CWI, Amsterdam
Contact: astra@astra-toolbox.com
Website: http://www.astra-toolbox.com/
This file is part of the ASTRA Toolbox.
The ASTRA Toolbox is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
The ASTRA Toolbox is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with the ASTRA Toolbox. If not, see .
-----------------------------------------------------------------------
*/
#include
#include
#include
#include
#include
#include "util.h"
#include "arith.h"
#ifdef STANDALONE
#include "testutil.h"
#endif
#define PIXELTRACE
typedef texture texture2D;
static texture2D gT_volumeTexture;
namespace astraCUDA {
static const unsigned g_MaxAngles = 2560;
__constant__ float gC_angle[g_MaxAngles];
__constant__ float gC_angle_offset[g_MaxAngles];
__constant__ float gC_angle_detsize[g_MaxAngles];
// optimization parameters
static const unsigned int g_anglesPerBlock = 16;
static const unsigned int g_detBlockSize = 32;
static const unsigned int g_blockSlices = 64;
// fixed point scaling factor
#define fPREC_FACTOR 16.0f
#define iPREC_FACTOR 16
static bool bindVolumeDataTexture(float* data, cudaArray*& dataArray, unsigned int pitch, unsigned int width, unsigned int height)
{
cudaChannelFormatDesc channelDesc = cudaCreateChannelDesc();
dataArray = 0;
cudaMallocArray(&dataArray, &channelDesc, width, height);
cudaMemcpy2DToArray(dataArray, 0, 0, data, pitch*sizeof(float), width*sizeof(float), height, cudaMemcpyDeviceToDevice);
gT_volumeTexture.addressMode[0] = cudaAddressModeBorder;
gT_volumeTexture.addressMode[1] = cudaAddressModeBorder;
gT_volumeTexture.filterMode = cudaFilterModeLinear;
gT_volumeTexture.normalized = false;
// TODO: For very small sizes (roughly <=512x128) with few angles (<=180)
// not using an array is more efficient.
// cudaBindTexture2D(0, gT_volumeTexture, (const void*)data, channelDesc, width, height, sizeof(float)*pitch);
cudaBindTextureToArray(gT_volumeTexture, dataArray, channelDesc);
// TODO: error value?
return true;
}
// projection for angles that are roughly horizontal
// (detector roughly vertical)
__global__ void FPhorizontal_simple(float* D_projData, unsigned int projPitch, unsigned int startSlice, unsigned int startAngle, unsigned int endAngle, const SDimensions dims, float outputScale)
{
const int relDet = threadIdx.x;
const int relAngle = threadIdx.y;
int angle = startAngle + blockIdx.x * g_anglesPerBlock + relAngle;
if (angle >= endAngle)
return;
const float theta = gC_angle[angle];
const float cos_theta = __cosf(theta);
const float sin_theta = __sinf(theta);
// compute start detector for this block/angle:
const int detRegion = blockIdx.y;
const int detector = detRegion * g_detBlockSize + relDet;
// Now project the part of the ray to angle,detector through
// slices startSlice to startSlice+g_blockSlices-1
if (detector < 0 || detector >= dims.iProjDets)
return;
const float fDetStep = -gC_angle_detsize[angle] / sin_theta;
float fSliceStep = cos_theta / sin_theta;
float fDistCorr;
if (sin_theta > 0.0f)
fDistCorr = -fDetStep;
else
fDistCorr = fDetStep;
fDistCorr *= outputScale;
float fVal = 0.0f;
// project detector on slice
float fP = (detector - 0.5f*dims.iProjDets + 0.5f - gC_angle_offset[angle]) * fDetStep + (startSlice - 0.5f*dims.iVolWidth + 0.5f) * fSliceStep + 0.5f*dims.iVolHeight - 0.5f + 0.5f;
float fS = startSlice + 0.5f;
int endSlice = startSlice + g_blockSlices;
if (endSlice > dims.iVolWidth)
endSlice = dims.iVolWidth;
if (dims.iRaysPerDet > 1) {
fP += (-0.5f*dims.iRaysPerDet + 0.5f)/dims.iRaysPerDet * fDetStep;
const float fSubDetStep = fDetStep / dims.iRaysPerDet;
fDistCorr /= dims.iRaysPerDet;
fSliceStep -= dims.iRaysPerDet * fSubDetStep;
for (int slice = startSlice; slice < endSlice; ++slice)
{
for (int iSubT = 0; iSubT < dims.iRaysPerDet; ++iSubT) {
fVal += tex2D(gT_volumeTexture, fS, fP);
fP += fSubDetStep;
}
fP += fSliceStep;
fS += 1.0f;
}
} else {
for (int slice = startSlice; slice < endSlice; ++slice)
{
fVal += tex2D(gT_volumeTexture, fS, fP);
fP += fSliceStep;
fS += 1.0f;
}
}
D_projData[angle*projPitch+detector] += fVal * fDistCorr;
}
// projection for angles that are roughly vertical
// (detector roughly horizontal)
__global__ void FPvertical_simple(float* D_projData, unsigned int projPitch, unsigned int startSlice, unsigned int startAngle, unsigned int endAngle, const SDimensions dims, float outputScale)
{
const int relDet = threadIdx.x;
const int relAngle = threadIdx.y;
int angle = startAngle + blockIdx.x * g_anglesPerBlock + relAngle;
if (angle >= endAngle)
return;
const float theta = gC_angle[angle];
const float cos_theta = __cosf(theta);
const float sin_theta = __sinf(theta);
// compute start detector for this block/angle:
const int detRegion = blockIdx.y;
const int detector = detRegion * g_detBlockSize + relDet;
// Now project the part of the ray to angle,detector through
// slices startSlice to startSlice+g_blockSlices-1
if (detector < 0 || detector >= dims.iProjDets)
return;
const float fDetStep = gC_angle_detsize[angle] / cos_theta;
float fSliceStep = sin_theta / cos_theta;
float fDistCorr;
if (cos_theta < 0.0f)
fDistCorr = -fDetStep;
else
fDistCorr = fDetStep;
fDistCorr *= outputScale;
float fVal = 0.0f;
float fP = (detector - 0.5f*dims.iProjDets + 0.5f - gC_angle_offset[angle]) * fDetStep + (startSlice - 0.5f*dims.iVolHeight + 0.5f) * fSliceStep + 0.5f*dims.iVolWidth - 0.5f + 0.5f;
float fS = startSlice+0.5f;
int endSlice = startSlice + g_blockSlices;
if (endSlice > dims.iVolHeight)
endSlice = dims.iVolHeight;
if (dims.iRaysPerDet > 1) {
fP += (-0.5f*dims.iRaysPerDet + 0.5f)/dims.iRaysPerDet * fDetStep;
const float fSubDetStep = fDetStep / dims.iRaysPerDet;
fDistCorr /= dims.iRaysPerDet;
fSliceStep -= dims.iRaysPerDet * fSubDetStep;
for (int slice = startSlice; slice < endSlice; ++slice)
{
for (int iSubT = 0; iSubT < dims.iRaysPerDet; ++iSubT) {
fVal += tex2D(gT_volumeTexture, fP, fS);
fP += fSubDetStep;
}
fP += fSliceStep;
fS += 1.0f;
}
} else {
for (int slice = startSlice; slice < endSlice; ++slice)
{
fVal += tex2D(gT_volumeTexture, fP, fS);
fP += fSliceStep;
fS += 1.0f;
}
}
D_projData[angle*projPitch+detector] += fVal * fDistCorr;
}
// Coordinates of center of detector pixel number t:
// x = (t - 0.5*nDets + 0.5 - fOffset) * fSize * cos(fAngle)
// y = - (t - 0.5*nDets + 0.5 - fOffset) * fSize * sin(fAngle)
static void convertAndUploadAngles(const SParProjection *projs, unsigned int nth, unsigned int ndets)
{
float *angles = new float[nth];
float *offsets = new float[nth];
float *detsizes = new float[nth];
for (int i = 0; i < nth; ++i)
getParParameters(projs[i], ndets, angles[i], detsizes[i], offsets[i]);
cudaMemcpyToSymbol(gC_angle, angles, nth*sizeof(float), 0, cudaMemcpyHostToDevice);
cudaMemcpyToSymbol(gC_angle_offset, offsets, nth*sizeof(float), 0, cudaMemcpyHostToDevice);
cudaMemcpyToSymbol(gC_angle_detsize, detsizes, nth*sizeof(float), 0, cudaMemcpyHostToDevice);
}
bool FP_simple_internal(float* D_volumeData, unsigned int volumePitch,
float* D_projData, unsigned int projPitch,
const SDimensions& dims, const SParProjection* angles,
float outputScale)
{
assert(dims.iProjAngles <= g_MaxAngles);
assert(angles);
cudaArray* D_dataArray;
bindVolumeDataTexture(D_volumeData, D_dataArray, volumePitch, dims.iVolWidth, dims.iVolHeight);
convertAndUploadAngles(angles, dims.iProjAngles, dims.iProjDets);
dim3 dimBlock(g_detBlockSize, g_anglesPerBlock); // detector block size, angles
std::list streams;
// Run over all angles, grouping them into groups of the same
// orientation (roughly horizontal vs. roughly vertical).
// Start a stream of grids for each such group.
// TODO: Check if it's worth it to store this info instead
// of recomputing it every FP.
unsigned int blockStart = 0;
unsigned int blockEnd = 0;
bool blockVertical = false;
for (unsigned int a = 0; a <= dims.iProjAngles; ++a) {
bool vertical = false;
// TODO: Having <= instead of < below causes a 5% speedup.
// Maybe we should detect corner cases and put them in the optimal
// group of angles.
if (a != dims.iProjAngles)
vertical = (fabsf(angles[a].fRayX) <= fabsf(angles[a].fRayY));
if (a == dims.iProjAngles || vertical != blockVertical) {
// block done
blockEnd = a;
if (blockStart != blockEnd) {
dim3 dimGrid((blockEnd-blockStart+g_anglesPerBlock-1)/g_anglesPerBlock,
(dims.iProjDets+g_detBlockSize-1)/g_detBlockSize); // angle blocks, detector blocks
// TODO: check if we can't immediately
// destroy the stream after use
cudaStream_t stream;
cudaStreamCreate(&stream);
streams.push_back(stream);
//printf("angle block: %d to %d, %d\n", blockStart, blockEnd, blockVertical);
if (!blockVertical)
for (unsigned int i = 0; i < dims.iVolWidth; i += g_blockSlices)
FPhorizontal_simple<<>>(D_projData, projPitch, i, blockStart, blockEnd, dims, outputScale);
else
for (unsigned int i = 0; i < dims.iVolHeight; i += g_blockSlices)
FPvertical_simple<<>>(D_projData, projPitch, i, blockStart, blockEnd, dims, outputScale);
}
blockVertical = vertical;
blockStart = a;
}
}
for (std::list::iterator iter = streams.begin(); iter != streams.end(); ++iter)
cudaStreamDestroy(*iter);
streams.clear();
cudaThreadSynchronize();
cudaTextForceKernelsCompletion();
cudaFreeArray(D_dataArray);
return true;
}
bool FP_simple(float* D_volumeData, unsigned int volumePitch,
float* D_projData, unsigned int projPitch,
const SDimensions& dims, const SParProjection* angles,
float outputScale)
{
for (unsigned int iAngle = 0; iAngle < dims.iProjAngles; iAngle += g_MaxAngles) {
SDimensions subdims = dims;
unsigned int iEndAngle = iAngle + g_MaxAngles;
if (iEndAngle >= dims.iProjAngles)
iEndAngle = dims.iProjAngles;
subdims.iProjAngles = iEndAngle - iAngle;
bool ret;
ret = FP_simple_internal(D_volumeData, volumePitch,
D_projData + iAngle * projPitch, projPitch,
subdims, angles + iAngle,
outputScale);
if (!ret)
return false;
}
return true;
}
bool FP(float* D_volumeData, unsigned int volumePitch,
float* D_projData, unsigned int projPitch,
const SDimensions& dims, const SParProjection* angles,
float outputScale)
{
return FP_simple(D_volumeData, volumePitch, D_projData, projPitch,
dims, angles, outputScale);
}
}
#ifdef STANDALONE
using namespace astraCUDA;
int main()
{
float* D_volumeData;
float* D_projData;
SDimensions dims;
dims.iVolWidth = 1024;
dims.iVolHeight = 1024;
dims.iProjAngles = 512;
dims.iProjDets = 1536;
dims.fDetScale = 1.0f;
dims.iRaysPerDet = 1;
unsigned int volumePitch, projPitch;
allocateVolume(D_volumeData, dims.iVolWidth, dims.iVolHeight, volumePitch);
printf("pitch: %u\n", volumePitch);
allocateVolume(D_projData, dims.iProjDets, dims.iProjAngles, projPitch);
printf("pitch: %u\n", projPitch);
unsigned int y, x;
float* img = loadImage("phantom.png", y, x);
float* sino = new float[dims.iProjAngles * dims.iProjDets];
memset(sino, 0, dims.iProjAngles * dims.iProjDets * sizeof(float));
copyVolumeToDevice(img, dims.iVolWidth, dims.iVolWidth, dims.iVolHeight, D_volumeData, volumePitch);
copySinogramToDevice(sino, dims.iProjDets, dims.iProjDets, dims.iProjAngles, D_projData, projPitch);
float* angle = new float[dims.iProjAngles];
for (unsigned int i = 0; i < dims.iProjAngles; ++i)
angle[i] = i*(M_PI/dims.iProjAngles);
FP(D_volumeData, volumePitch, D_projData, projPitch, dims, angle, 0, 1.0f);
delete[] angle;
copySinogramFromDevice(sino, dims.iProjDets, dims.iProjDets, dims.iProjAngles, D_projData, projPitch);
float s = 0.0f;
for (unsigned int y = 0; y < dims.iProjAngles; ++y)
for (unsigned int x = 0; x < dims.iProjDets; ++x)
s += sino[y*dims.iProjDets+x] * sino[y*dims.iProjDets+x];
printf("cpu norm: %f\n", s);
//zeroVolume(D_projData, projPitch, dims.iProjDets, dims.iProjAngles);
s = dotProduct2D(D_projData, projPitch, dims.iProjDets, dims.iProjAngles, 1, 0);
printf("gpu norm: %f\n", s);
saveImage("sino.png",dims.iProjAngles,dims.iProjDets,sino);
return 0;
}
#endif