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authorWim van Aarle <wimvanaarle@gmail.com>2015-03-18 11:08:20 +0100
committerWim van Aarle <wimvanaarle@gmail.com>2015-03-18 11:08:20 +0100
commitfb01aaf4cd4e7f22308e07bd94dcfc97083e8ec8 (patch)
treef61cc9842bfc1875d9fc4fa37a697efb3bba8895 /python/astra/data3d_c.pyx
parentc9730a84bd2be4fa2df2fd2ef947a624e9a09f02 (diff)
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updated python bindings
Diffstat (limited to 'python/astra/data3d_c.pyx')
-rw-r--r--python/astra/data3d_c.pyx41
1 files changed, 25 insertions, 16 deletions
diff --git a/python/astra/data3d_c.pyx b/python/astra/data3d_c.pyx
index f821aaf..4b069f7 100644
--- a/python/astra/data3d_c.pyx
+++ b/python/astra/data3d_c.pyx
@@ -51,26 +51,23 @@ cdef extern from *:
CFloat32Data3DMemory * dynamic_cast_mem "dynamic_cast<astra::CFloat32Data3DMemory*>" (CFloat32Data3D * ) except NULL
def create(datatype,geometry,data=None):
- cdef XMLDocument * xml
- cdef Config cfg
+ cdef Config *cfg
cdef CVolumeGeometry3D * pGeometry
cdef CProjectionGeometry3D * ppGeometry
cdef CFloat32Data3DMemory * pDataObject3D
cdef CConeProjectionGeometry3D* pppGeometry
if datatype == '-vol':
- xml = utils.dict2XML(six.b('VolumeGeometry'), geometry)
- cfg.self = xml.getRootNode()
+ cfg = utils.dictToConfig(six.b('VolumeGeometry'), geometry)
pGeometry = new CVolumeGeometry3D()
- if not pGeometry.initialize(cfg):
- del xml
+ if not pGeometry.initialize(cfg[0]):
+ del cfg
del pGeometry
raise Exception('Geometry class not initialized.')
pDataObject3D = <CFloat32Data3DMemory * > new CFloat32VolumeData3DMemory(pGeometry)
- del xml
+ del cfg
del pGeometry
elif datatype == '-sino' or datatype == '-proj3d':
- xml = utils.dict2XML(six.b('ProjectionGeometry'), geometry)
- cfg.self = xml.getRootNode()
+ cfg = utils.dictToConfig(six.b('ProjectionGeometry'), geometry)
tpe = wrap_from_bytes(cfg.self.getAttribute(six.b('type')))
if (tpe == "parallel3d"):
ppGeometry = <CProjectionGeometry3D*> new CParallelProjectionGeometry3D();
@@ -83,19 +80,18 @@ def create(datatype,geometry,data=None):
else:
raise Exception("Invalid geometry type.")
- if not ppGeometry.initialize(cfg):
- del xml
+ if not ppGeometry.initialize(cfg[0]):
+ del cfg
del ppGeometry
raise Exception('Geometry class not initialized.')
pDataObject3D = <CFloat32Data3DMemory * > new CFloat32ProjectionData3DMemory(ppGeometry)
del ppGeometry
- del xml
+ del cfg
elif datatype == "-sinocone":
- xml = utils.dict2XML(six.b('ProjectionGeometry'), geometry)
- cfg.self = xml.getRootNode()
+ cfg = utils.dictToConfig(six.b('ProjectionGeometry'), geometry)
pppGeometry = new CConeProjectionGeometry3D()
- if not pppGeometry.initialize(cfg):
- del xml
+ if not pppGeometry.initialize(cfg[0]):
+ del cfg
del pppGeometry
raise Exception('Geometry class not initialized.')
pDataObject3D = <CFloat32Data3DMemory * > new CFloat32ProjectionData3DMemory(pppGeometry)
@@ -112,6 +108,19 @@ def create(datatype,geometry,data=None):
return man3d.store(<CFloat32Data3D*>pDataObject3D)
+def get_geometry(i):
+ cdef CFloat32Data3DMemory * pDataObject = dynamic_cast_mem(getObject(i))
+ cdef CFloat32ProjectionData3DMemory * pDataObject2
+ cdef CFloat32VolumeData3DMemory * pDataObject3
+ if pDataObject.getType() == THREEPROJECTION:
+ pDataObject2 = <CFloat32ProjectionData3DMemory * >pDataObject
+ geom = utils.configToDict(pDataObject2.getGeometry().getConfiguration())
+ elif pDataObject.getType() == THREEVOLUME:
+ pDataObject3 = <CFloat32VolumeData3DMemory * >pDataObject
+ geom = utils.configToDict(pDataObject3.getGeometry().getConfiguration())
+ else:
+ raise Exception("Not a known data object")
+ return geom
cdef fillDataObject(CFloat32Data3DMemory * obj, data):
if data is None: